1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g005940

Solyc01g005940


Description : Phytoene synthase (AHRD V3.3 *** A0A0K1L5A0_MALDO)


Gene families : OG_42_0001912 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001912_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g005940
Cluster HCCA clusters: Cluster_299

Target Alias Description ECC score Gene Family Method Actions
LOC_Os06g51290 No alias phytoene synthase, chloroplast precursor, putative, expressed 0.02 Orthogroups_2024-Update
Pp1s134_62V6 No alias phytoene synthase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0009058 biosynthetic process IEA InterProScan predictions
MF GO:0016740 transferase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003713 transcription coactivator activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
InterPro domains Description Start Stop
IPR002060 Squ/phyt_synthse 3 245
No external refs found!