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  5. Sobic.002G396500.1

Sobic.002G396500.1


Description : SAGA complex assembly platform component *(TRA1) & component *(TRA1) of SAGA transcription co-activator complex


Gene families : OG_42_0004014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G396500.1
Cluster HCAA Clusters: Cluster_254

Target Alias Description ECC score Gene Family Method Actions
98463 No alias Phosphatidylinositol 3- and 4-kinase family protein with... 0.06 Orthogroups_2024-Update
At2g17930 No alias Phosphatidylinositol 3-and 4-kinase family protein with... 0.02 Orthogroups_2024-Update
Bradi1g19650 No alias Phosphatidylinositol 3- and 4-kinase family protein with... 0.07 Orthogroups_2024-Update
Cre02.g088750 No alias phosphotransferases, alcohol group as... 0.02 Orthogroups_2024-Update
Glyma.11G077000 No alias Phosphatidylinositol 3- and 4-kinase family protein with... 0.05 Orthogroups_2024-Update
Kfl00192_0160 kfl00192_0160_v1.1 (at4g36080 : 4007.0) phosphotransferases, alcohol group... 0.03 Orthogroups_2024-Update
MA_10427352g0010 No alias (at2g17930 : 666.0) Phosphatidylinositol 3- and 4-kinase... 0.03 Orthogroups_2024-Update
Mp5g23620.1 No alias component TRA1 of SAGA transcription co-activator... 0.04 Orthogroups_2024-Update
Potri.005G114300 No alias Phosphatidylinositol 3- and 4-kinase family protein with... 0.02 Orthogroups_2024-Update
Seita.2G412100.1 No alias component *(TRA1) of SAGA transcription co-activator... 0.09 Orthogroups_2024-Update
evm.model.tig00021537.68 No alias (at2g17930 : 373.0) Phosphatidylinositol 3- and 4-kinase... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000278 mitotic cell cycle IEP Predicted GO
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000403 PI3/4_kinase_cat_dom 3544 3790
IPR003151 PIK-rel_kinase_FAT 2791 3131
IPR003152 FATC_dom 3846 3877
No external refs found!