1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.003G124800.1

Sobic.003G124800.1


Description : regulatory component *(RPN11) of 26S proteasome


Gene families : OG_42_0003245 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003245_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G124800.1
Cluster HCAA Clusters: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
Bradi2g09950 No alias Mov34/MPN/PAD-1 family protein 0.06 Orthogroups_2024-Update
Brara.B03713.1 No alias regulatory component *(RPN11) of 26S proteasome 0.03 Orthogroups_2024-Update
Cre01.g011500 No alias Mov34/MPN/PAD-1 family protein 0.05 Orthogroups_2024-Update
Mp5g01180.1 No alias regulatory component RPN11 of 26S proteasome 0.02 Orthogroups_2024-Update
Pp1s146_35V6 No alias 26s proteasome non-atpase regulatory subunit 14 0.02 Orthogroups_2024-Update
Seita.3G240100.1 No alias regulatory component *(RPN11) of 26S proteasome 0.03 Orthogroups_2024-Update
Seita.5G049400.1 No alias regulatory component *(RPN11) of 26S proteasome 0.03 Orthogroups_2024-Update
Sopen04g032810 No alias JAB1/Mov34/MPN/PAD-1 ubiquitin protease 0.02 Orthogroups_2024-Update
evm.model.tig00001542.22 No alias (at5g23540 : 487.0) Mov34/MPN/PAD-1 family protein;... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
MF GO:0008233 peptidase activity IEA 16Dec
MF GO:0008237 metallopeptidase activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
CC GO:0005787 signal peptidase complex IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
BP GO:0009894 regulation of catabolic process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
BP GO:0042176 regulation of protein catabolic process IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1905369 endopeptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR024969 Rpn11/EIF3F_C 171 293
IPR000555 JAMM/MPN+_dom 25 136
No external refs found!