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  5. Sobic.003G151500.1

Sobic.003G151500.1


Description : component *(CAF) of CRS2-CAF plastidial RNA splicing factor complexes


Gene families : OG_42_0001286 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001286_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G151500.1
Cluster HCAA Clusters: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
A4A49_15851 No alias crs2-associated factor 1, mitochondrial 0.03 Orthogroups_2024-Update
Bradi2g12140 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.06 Orthogroups_2024-Update
Bradi2g13640 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.06 Orthogroups_2024-Update
Potri.006G156200 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.05 Orthogroups_2024-Update
Potri.010G042500 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.04 Orthogroups_2024-Update
Seita.9G384400.1 No alias component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.08 Orthogroups_2024-Update
Solyc05g018240 No alias GSVIVT00005628001, HT7 (AHRD V3.3 *** A0A0A9GN13_ARUDO) 0.02 Orthogroups_2024-Update
Sopen05g015000 No alias CRS1 / YhbY (CRM) domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 236 319
IPR001890 RNA-binding_CRM 354 437
No external refs found!