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  5. Sobic.003G327100.1

Sobic.003G327100.1


Description : RING-H2-class BTL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G327100.1
Cluster HCAA Clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
At3g30460 No alias RING/U-box superfamily protein... 0.03 Orthogroups_2024-Update
Brara.E02211.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Kfl00113_0130 kfl00113_0130_v1.1 (at5g20910 : 134.0) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update
LOC_Os12g04650 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
Mp7g04520.1 No alias no hits & (original description: none) 0.01 Orthogroups_2024-Update
Seita.1G222900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc02g065650 No alias LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
evm.model.contig_2210.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 189 231
IPR039525 RNF126-like_zinc-ribbon 6 36
No external refs found!