1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.003G430400.1

Sobic.003G430400.1


Description : calcium sensor *(CML)


Gene families : OG_42_0001705 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001705_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G430400.1
Cluster HCAA Clusters: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
A4A49_09950 No alias calcium-binding protein cml37 0.04 Orthogroups_2024-Update
A4A49_12965 No alias calcium-binding protein cml38 0.03 Orthogroups_2024-Update
Brara.B02276.1 No alias calcium sensor *(CML) 0.04 Orthogroups_2024-Update
Brara.G03461.1 No alias calcium sensor *(CML) 0.02 Orthogroups_2024-Update
Brara.I01729.1 No alias calcium sensor *(CML) 0.02 Orthogroups_2024-Update
GRMZM2G340313 No alias Calcium-binding EF-hand family protein 0.05 Orthogroups_2024-Update
Glyma.11G157200 No alias calmodulin like 37 0.02 Orthogroups_2024-Update
LOC_Os01g72530 No alias OsCML31 - Calmodulin-related calcium sensor protein, expressed 0.02 Orthogroups_2024-Update
Potri.002G001400 No alias calmodulin like 37 0.06 Orthogroups_2024-Update
Potri.005G259900 No alias calmodulin-like 38 0.04 Orthogroups_2024-Update
Potri.T115000 No alias calmodulin-like 38 0.06 Orthogroups_2024-Update
Seita.5G456800.1 No alias calcium sensor *(CML) 0.08 Orthogroups_2024-Update
Seita.9G333800.1 No alias calcium sensor *(CML) 0.03 Orthogroups_2024-Update
Solyc03g005040 No alias Calcium-binding protein (AHRD V3.3 *** A0A199V9T9_ANACO) 0.04 Orthogroups_2024-Update
Solyc11g071750 No alias Calmodulin-like protein (AHRD V1 ***- Q0VJ70_DATME) 0.02 Orthogroups_2024-Update
Solyc11g071760 No alias regulator of gene silencing AY642285 0.03 Orthogroups_2024-Update
Sopen11g029410 No alias EF-hand domain pair 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 34 87
IPR002048 EF_hand_dom 117 166
No external refs found!