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  5. Sobic.004G048800.1

Sobic.004G048800.1


Description : RNA helicase component *(SKI2) of SUPERKILLER regulation complex


Gene families : OG_42_0001297 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G048800.1
Cluster HCAA Clusters: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
At3g46960 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.03 Orthogroups_2024-Update
Bradi3g04550 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.04 Orthogroups_2024-Update
Cre11.g482483 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 Orthogroups_2024-Update
GRMZM2G047949 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.04 Orthogroups_2024-Update
HORVU6Hr1G025670.1 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation complex 0.03 Orthogroups_2024-Update
PSME_00020414-RA No alias (at3g46960 : 409.0) RNA helicase, ATP-dependent,... 0.03 Orthogroups_2024-Update
PSME_00022970-RA No alias (at2g06990 : 1419.0) encodes a putative DExH-box RNA... 0.04 Orthogroups_2024-Update
Potri.006G078000 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
Sopen01g045490 No alias rRNA-processing arch domain 0.02 Orthogroups_2024-Update
Sopen06g001970 No alias DSHCT (NUC185) domain 0.03 Orthogroups_2024-Update
evm.model.contig_2284.16 No alias (at1g59760 : 812.0) RNA helicase, ATP-dependent,... 0.01 Orthogroups_2024-Update
evm.model.tig00001155.2 No alias (at3g46960 : 287.0) RNA helicase, ATP-dependent,... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
BP GO:0010921 regulation of phosphatase activity IEP Predicted GO
BP GO:0015858 nucleoside transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
BP GO:0019220 regulation of phosphate metabolic process IEP Predicted GO
MF GO:0019902 phosphatase binding IEP Predicted GO
MF GO:0019903 protein phosphatase binding IEP Predicted GO
BP GO:0031399 regulation of protein modification process IEP Predicted GO
BP GO:0035303 regulation of dephosphorylation IEP Predicted GO
BP GO:0035304 regulation of protein dephosphorylation IEP Predicted GO
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0051174 regulation of phosphorus metabolic process IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1901642 nucleoside transmembrane transport IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1902554 serine/threonine protein kinase complex IEP Predicted GO
CC GO:1902911 protein kinase complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
CC GO:1990316 Atg1/ULK1 kinase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR025696 rRNA_proc-arch_dom 868 1167
IPR011545 DEAD/DEAH_box_helicase_dom 387 534
IPR012961 Ski2_C 1194 1363
No external refs found!