1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g096000

Solyc03g096000


Description : Clathrin heavy chain (AHRD V3.3 *** K4BJ22_SOLLC)


Gene families : OG_42_0001928 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001928_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g096000
Cluster HCCA clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Bradi4g26877 No alias Clathrin, heavy chain 0.06 Orthogroups_2024-Update
Bradi4g44977 No alias Clathrin, heavy chain 0.03 Orthogroups_2024-Update
Brara.E02956.1 No alias heavy chain of clathrin triskelion 0.03 Orthogroups_2024-Update
HORVU4Hr1G024710.12 No alias heavy chain of clathrin triskelion 0.02 Orthogroups_2024-Update
Kfl00232_0230 kfl00232_0230_v1.1 (at3g11130 : 2670.0) Clathrin, heavy chain; FUNCTIONS... 0.03 Orthogroups_2024-Update
Pp1s147_10V6 No alias F9F8.6; clathrin heavy chain, putative [KO:K04646]... 0.02 Orthogroups_2024-Update
Pp1s7_102V6 No alias F9F8.6; clathrin heavy chain, putative [KO:K04646]... 0.02 Orthogroups_2024-Update
Seita.7G333500.1 No alias heavy chain of clathrin triskelion 0.04 Orthogroups_2024-Update
Seita.8G020100.1 No alias heavy chain of clathrin triskelion 0.03 Orthogroups_2024-Update
Sobic.005G003300.1 No alias heavy chain of clathrin triskelion 0.03 Orthogroups_2024-Update
Sobic.008G003700.1 No alias heavy chain of clathrin triskelion 0.04 Orthogroups_2024-Update
Sopen03g026100 No alias Region in Clathrin and VPS 0.04 Orthogroups_2024-Update
evm.model.tig00000042.11 No alias (at3g08530 : 1751.0) Clathrin, heavy chain; FUNCTIONS... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA InterProScan predictions
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA InterProScan predictions
CC GO:0030132 clathrin coat of coated pit IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016151 nickel cation binding IEP Predicted GO
CC GO:0016272 prefoldin complex IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000547 Clathrin_H-chain/VPS_repeat 1146 1281
IPR000547 Clathrin_H-chain/VPS_repeat 1289 1431
IPR000547 Clathrin_H-chain/VPS_repeat 701 840
IPR000547 Clathrin_H-chain/VPS_repeat 993 1131
IPR000547 Clathrin_H-chain/VPS_repeat 850 978
IPR000547 Clathrin_H-chain/VPS_repeat 1439 1579
IPR000547 Clathrin_H-chain/VPS_repeat 557 688
IPR015348 Clathrin_H-chain_linker_core 344 367
IPR022365 Clathrin_H-chain_propeller_rpt 22 56
IPR022365 Clathrin_H-chain_propeller_rpt 154 197
No external refs found!