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  5. At3g55560

At3g55560


Description : AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VH84]


Gene families : OG_42_0000350 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000350_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g55560
Cluster HCCA clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Bradi2g30423 No alias AT-hook motif nuclear-localized protein 20 0.03 Orthogroups_2024-Update
Glyma.10G167100 No alias AT-hook motif nuclear-localized protein 20 0.04 Orthogroups_2024-Update
Glyma.11G221200 No alias AT-hook protein of GA feedback 2 0.04 Orthogroups_2024-Update
Glyma.18G036200 No alias AT-hook protein of GA feedback 2 0.04 Orthogroups_2024-Update
LOC_Os06g04540 No alias DNA binding protein, putative, expressed 0.02 Orthogroups_2024-Update
Mp7g18120.1 No alias AT-hook motif nuclear-localized protein 20... 0.02 Orthogroups_2024-Update
Potri.001G142800 No alias Predicted AT-hook DNA-binding family protein 0.03 Orthogroups_2024-Update
Potri.005G202700 No alias Predicted AT-hook DNA-binding family protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0006353 DNA-templated transcription, termination IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
MF GO:0016972 thiol oxidase activity IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR005175 PPC_dom 117 228
No external refs found!