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  5. Sobic.004G204200.1

Sobic.004G204200.1


Description : Unknown function


Gene families : OG_42_0008012 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008012_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G204200.1
Cluster HCAA Clusters: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Bradi3g47867 No alias embryo defective 2423 0.03 Orthogroups_2024-Update
Cre03.g186550 No alias embryo defective 2423 0.02 Orthogroups_2024-Update
Glyma.04G193000 No alias embryo defective 2423 0.03 Orthogroups_2024-Update
Seita.1G221000.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000098 sulfur amino acid catabolic process IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Predicted GO
MF GO:0004455 ketol-acid reductoisomerase activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004784 superoxide dismutase activity IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
BP GO:0006808 regulation of nitrogen utilization IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008418 protein-N-terminal asparagine amidohydrolase activity IEP Predicted GO
BP GO:0009063 cellular amino acid catabolic process IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016255 attachment of GPI anchor to protein IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0030328 prenylcysteine catabolic process IEP Predicted GO
BP GO:0030329 prenylcysteine metabolic process IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
BP GO:0042219 cellular modified amino acid catabolic process IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0044273 sulfur compound catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
MF GO:0061666 UFM1 ligase activity IEP Predicted GO
MF GO:0071568 UFM1 transferase activity IEP Predicted GO
BP GO:0071569 protein ufmylation IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR019337 Telomere_length_regulation_dom 631 742
No external refs found!