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  5. Sobic.004G283400.1

Sobic.004G283400.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G283400.1
Cluster HCAA Clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
172324 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
96681 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
A4A49_10724 No alias ring-h2 finger protein atl33 0.03 Orthogroups_2024-Update
A4A49_11165 No alias ring-h2 finger protein atl8 0.03 Orthogroups_2024-Update
A4A49_18116 No alias ring-h2 finger protein atl78 0.03 Orthogroups_2024-Update
A4A49_19370 No alias ring-h2 finger protein atl70 0.02 Orthogroups_2024-Update
A4A49_27114 No alias ring-h2 finger protein atl54 0.03 Orthogroups_2024-Update
A4A49_29196 No alias ring-h2 finger protein atl72 0.03 Orthogroups_2024-Update
A4A49_36505 No alias e3 ubiquitin-protein ligase atl6 0.04 Orthogroups_2024-Update
A4A49_36900 No alias putative ring-h2 finger protein atl37 0.03 Orthogroups_2024-Update
A4A49_59878 No alias ring-h2 finger protein atl60 0.04 Orthogroups_2024-Update
At1g76410 No alias ATL8 [Source:UniProtKB/TrEMBL;Acc:A0A178WF21] 0.02 Orthogroups_2024-Update
At2g17450 No alias Probable E3 ubiquitin-protein ligase ATL44... 0.02 Orthogroups_2024-Update
At2g42350 No alias RING-H2 finger protein ATL40... 0.03 Orthogroups_2024-Update
At3g14320 No alias Putative RING-H2 finger protein ATL61... 0.03 Orthogroups_2024-Update
At3g18930 No alias RING/U-box superfamily protein... 0.04 Orthogroups_2024-Update
At3g19140 No alias Putative RING-H2 finger protein ATL62... 0.02 Orthogroups_2024-Update
At4g35480 No alias RHA3B [Source:UniProtKB/TrEMBL;Acc:A0A178UXS9] 0.04 Orthogroups_2024-Update
At5g06490 No alias Putative RING-H2 finger protein ATL71... 0.03 Orthogroups_2024-Update
At5g10380 No alias E3 ubiquitin-protein ligase RING1... 0.02 Orthogroups_2024-Update
Bradi1g60390 No alias hypoxia-responsive family protein / zinc finger... 0.03 Orthogroups_2024-Update
Bradi4g44454 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.03 Orthogroups_2024-Update
Bradi5g19490 No alias RING-H2 finger A3A 0.03 Orthogroups_2024-Update
Brara.A02911.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.A03446.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.A03736.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.B03540.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.C03353.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.C03618.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.D02285.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E02489.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.E02957.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E03386.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.F02864.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.G02185.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.G02364.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.H01760.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.I03307.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.K00650.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Cre11.g476250 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.01 Orthogroups_2024-Update
Cre16.g651400 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G004480 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G031280 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G041549 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G409372 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G447566 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G203400 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G239900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G222300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G264300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G289100 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G242500 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G108500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G178400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G173800 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.18G025700 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.19G010400 No alias hypoxia-responsive family protein / zinc finger... 0.02 Orthogroups_2024-Update
HORVU0Hr1G016510.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
HORVU1Hr1G059020.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU2Hr1G074210.1 No alias regulatory ubiquitin-protein ligase *(PRU2) 0.04 Orthogroups_2024-Update
HORVU3Hr1G028280.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
HORVU3Hr1G028370.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU4Hr1G025400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU5Hr1G082840.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G011010.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G050490.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU6Hr1G077610.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
HORVU7Hr1G042940.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G080020.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
HORVU7Hr1G120910.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU7Hr1G120930.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
LOC_Os01g11460 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g11500 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g08200 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g34230 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g40020 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g45060 No alias RING-H2 finger protein ATL2M, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g36500 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g38110 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g39640 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_10426834g0010 No alias (at1g49230 : 115.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_10431388g0020 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_12352g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_12363g0010 No alias (at1g72310 : 126.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
MA_41514g0010 No alias (at5g01880 : 91.3) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_80729g0030 No alias (at3g16720 : 139.0) RING-H2 protein induced after... 0.02 Orthogroups_2024-Update
PSME_00003023-RA No alias (at1g72200 : 141.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00022170-RA No alias (at1g53820 : 134.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00034763-RA No alias (at5g05280 : 85.1) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00051567-RA No alias (at3g16720 : 108.0) RING-H2 protein induced after... 0.02 Orthogroups_2024-Update
PSME_00054098-RA No alias (at3g16720 : 124.0) RING-H2 protein induced after... 0.04 Orthogroups_2024-Update
Potri.001G400600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G201500 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.008G018900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G219200 No alias TOXICOS EN LEVADURA 2 0.03 Orthogroups_2024-Update
Potri.010G235200 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.011G063100 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.012G003900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G157000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.014G043200 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.014G091000 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Potri.019G010500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.019G043900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.019G091400 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Pp1s71_162V6 No alias ring finger 0.02 Orthogroups_2024-Update
Seita.1G203900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.1G275700.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Seita.4G172100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G023000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G309700.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.7G095300.1 No alias regulatory ubiquitin-protein ligase *(PRU2) &... 0.02 Orthogroups_2024-Update
Seita.9G410900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G232800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G170300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G181300.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G305000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.007G165000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc01g088440 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc01g109200 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061DYT2_THECC) 0.02 Orthogroups_2024-Update
Solyc09g075320 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT4G15975.1) 0.02 Orthogroups_2024-Update
Solyc11g066510 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT2G27940.1) 0.04 Orthogroups_2024-Update
Solyc12g087860 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen02g016820 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen03g031440 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen09g005360 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen10g032300 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen12g024180 No alias Ring finger domain 0.02 Orthogroups_2024-Update
evm.model.tig00001128.32 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
CC GO:0005856 cytoskeleton IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 108 151
No external refs found!