1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.004G343600.1

Sobic.004G343600.1


Description : component *(CSL4) of exosome EXO9 core complex


Gene families : OG_42_0007316 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007316_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G343600.1
Cluster HCAA Clusters: Cluster_259

Target Alias Description ECC score Gene Family Method Actions
GRMZM5G841900 No alias Nucleic acid-binding, OB-fold-like protein 0.05 Orthogroups_2024-Update
LOC_Os02g57070 No alias 3-5 exoribonuclease CSL4, putative, expressed 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEA 16Dec
MF GO:0003723 RNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003852 2-isopropylmalate synthase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006551 leucine metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009098 leucine biosynthetic process IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR019495 EXOSC1_C 104 147
IPR025721 Exosome_cplx_N_dom 15 52
No external refs found!