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  5. Sobic.005G138600.1

Sobic.005G138600.1


Description : Unknown function


Gene families : OG_42_0005308 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005308_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G138600.1
Cluster HCAA Clusters: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Bradi4g17160 No alias DEAD/DEAH box helicase, putative 0.04 Orthogroups_2024-Update
LOC_Os11g32880 No alias DEAD-box ATP-dependent RNA helicase, putative, expressed 0.03 Orthogroups_2024-Update
Seita.8G140800.1 No alias Unknown function 0.1 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
BP GO:0006281 DNA repair IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP Predicted GO
MF GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006480 N-terminal protein amino acid methylation IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
BP GO:0009435 NAD biosynthetic process IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
BP GO:0019674 NAD metabolic process IEP Predicted GO
BP GO:0031365 N-terminal protein amino acid modification IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 304 441
IPR003711 CarD-like/TRCF_domain 159 253
IPR005118 TRCF_C 686 775
IPR001650 Helicase_C 487 589
No external refs found!