1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.006G055800.1

Sobic.006G055800.1


Description : component *(cpTatB) of thylakoid membrane Tat translocation system & protein involved in PS-II assembly *(HCF106)


Gene families : OG_42_0006691 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006691_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G055800.1
Cluster HCAA Clusters: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
Bradi1g39520 No alias Bacterial sec-independent translocation protein mttA/Hcf106 0.09 Orthogroups_2024-Update
Brara.C01428.1 No alias component *(cpTatB) of thylakoid membrane Tat... 0.03 Orthogroups_2024-Update
Cre08.g371650 No alias Bacterial sec-independent translocation protein mttA/Hcf106 0.03 Orthogroups_2024-Update
LOC_Os11g37130 No alias mttA/Hcf106 family protein, putative, expressed 0.04 Orthogroups_2024-Update
Mp8g12830.1 No alias HCF106 protein involved in PS-II assembly. component... 0.03 Orthogroups_2024-Update
Potri.015G147100 No alias Bacterial sec-independent translocation protein mttA/Hcf106 0.04 Orthogroups_2024-Update
Seita.5G379700.1 No alias component *(cpTatB) of thylakoid membrane Tat... 0.08 Orthogroups_2024-Update
Solyc03g025310 No alias Sec-independent translocase protein TatA (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
MF GO:0035596 methylthiotransferase activity IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
MF GO:0050497 transferase activity, transferring alkylthio groups IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003369 TatA/B/E 72 148
No external refs found!