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  5. Sobic.006G131600.1

Sobic.006G131600.1


Description : calcium sensor *(CML)


Gene families : OG_42_0000821 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000821_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G131600.1
Cluster HCAA Clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
96597 No alias ARF-GAP domain 11 0.02 Orthogroups_2024-Update
A4A49_23290 No alias putative calcium-binding protein cml44 0.02 Orthogroups_2024-Update
A4A49_27262 No alias calmodulin-like protein 3 0.03 Orthogroups_2024-Update
At1g05990 No alias Calmodulin-like protein 7... 0.03 Orthogroups_2024-Update
At3g07490 No alias CML3 [Source:UniProtKB/TrEMBL;Acc:A0A178V7U1] 0.07 Orthogroups_2024-Update
Brara.I04081.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Glyma.04G245000 No alias Calcium-binding EF-hand family protein 0.03 Orthogroups_2024-Update
Glyma.12G052100 No alias Calcium-binding EF-hand family protein 0.03 Orthogroups_2024-Update
MA_10289213g0010 No alias (at3g07490 : 115.0) A member of ARF GAP domain (AGD), A... 0.02 Orthogroups_2024-Update
MA_393053g0010 No alias (at3g07490 : 116.0) A member of ARF GAP domain (AGD), A... 0.02 Orthogroups_2024-Update
MA_6883323g0010 No alias (at3g07490 : 102.0) A member of ARF GAP domain (AGD), A... 0.06 Orthogroups_2024-Update
MA_9257733g0010 No alias (q09011|cast_soltu : 108.0) Calcium-binding protein CAST... 0.02 Orthogroups_2024-Update
Mp6g18000.1 No alias Calmodulin-like protein 3 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp6g20440.1 No alias Probable calcium-binding protein CML22 OS=Oryza sativa... 0.08 Orthogroups_2024-Update
Potri.002G077300 No alias Calcium-binding EF-hand family protein 0.05 Orthogroups_2024-Update
Potri.018G127100 No alias Calcium-binding EF-hand family protein 0.03 Orthogroups_2024-Update
Solyc04g058160 No alias Calcium-binding protein (AHRD V3.3 *** A0A1B0WUT3_SOLHA) 0.03 Orthogroups_2024-Update
Sopen04g026060 No alias EF hand 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 77 139
IPR002048 EF_hand_dom 165 230
No external refs found!