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  5. Sobic.006G277200.1

Sobic.006G277200.1


Description : TUB-type transcription factor


Gene families : OG_42_0000271 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000271_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G277200.1
Cluster HCAA Clusters: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Bradi2g56070 No alias tubby like protein 10 0.02 Orthogroups_2024-Update
Bradi3g13080 No alias tubby like protein 10 0.04 Orthogroups_2024-Update
Bradi5g27110 No alias tubby like protein 1 0.03 Orthogroups_2024-Update
GRMZM2G108228 No alias tubby like protein 10 0.03 Orthogroups_2024-Update
Glyma.13G269600 No alias tubby like protein 7 0.02 Orthogroups_2024-Update
Glyma.17G022700 No alias tubby like protein 3 0.02 Orthogroups_2024-Update
HORVU1Hr1G076900.2 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os04g59130 No alias OsFBT6 - F-box and tubby domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g43850 No alias OsFBT9 - F-box and tubby domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.002G034600 No alias tubby like protein 6 0.03 Orthogroups_2024-Update
Pp1s101_148V6 No alias f-box family protein 0.02 Orthogroups_2024-Update
Pp1s25_366V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.2G422900.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Seita.3G148500.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Seita.6G003300.1 No alias TUB-type transcription factor 0.04 Orthogroups_2024-Update
Sopen01g029620 No alias Tub family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009435 NAD biosynthetic process IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019674 NAD metabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 51 98
IPR000007 Tubby_C 112 448
No external refs found!