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Description : regulatory factor *(RP8) of RNA polymerase RpoA activity
Gene families : OG_42_0003458 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003458_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor: Sobic.007G027000.1 | |
| Cluster | HCAA Clusters: Cluster_6 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi3g18120 | No alias | Function unknown | 0.06 | Orthogroups_2024-Update | |
| Brara.A00109.1 | No alias | regulatory factor *(RP8) of RNA polymerase RpoA activity | 0.05 | Orthogroups_2024-Update | |
| Glyma.01G019900 | No alias | Function unknown | 0.04 | Orthogroups_2024-Update | |
| Potri.005G170400 | No alias | Function unknown | 0.03 | Orthogroups_2024-Update | |
| Seita.9G083900.1 | No alias | regulatory factor *(RP8) of RNA polymerase RpoA activity | 0.1 | Orthogroups_2024-Update | |
| Solyc02g091640 | No alias | endoribonuclease E-like protein (AHRD V3.3 *** AT4G37920.1) | 0.03 | Orthogroups_2024-Update | |
| Solyc04g072400 | No alias | Plant/F7F23-4 protein (AHRD V3.3 *** G7IJR9_MEDTR) | 0.04 | Orthogroups_2024-Update | |
| Sopen02g036250 | No alias | hypothetical protein | 0.06 | Orthogroups_2024-Update | |
| evm.model.tig00020537.60 | No alias | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000049 | tRNA binding | IEP | Predicted GO |
| MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
| MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
| MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003725 | double-stranded RNA binding | IEP | Predicted GO |
| MF | GO:0003909 | DNA ligase activity | IEP | Predicted GO |
| MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Predicted GO |
| MF | GO:0004109 | coproporphyrinogen oxidase activity | IEP | Predicted GO |
| MF | GO:0004565 | beta-galactosidase activity | IEP | Predicted GO |
| MF | GO:0004655 | porphobilinogen synthase activity | IEP | Predicted GO |
| MF | GO:0005524 | ATP binding | IEP | Predicted GO |
| MF | GO:0005525 | GTP binding | IEP | Predicted GO |
| BP | GO:0006281 | DNA repair | IEP | Predicted GO |
| BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
| BP | GO:0006310 | DNA recombination | IEP | Predicted GO |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Predicted GO |
| MF | GO:0008144 | drug binding | IEP | Predicted GO |
| CC | GO:0009341 | beta-galactosidase complex | IEP | Predicted GO |
| MF | GO:0015925 | galactosidase activity | IEP | Predicted GO |
| MF | GO:0016634 | oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor | IEP | Predicted GO |
| MF | GO:0016872 | intramolecular lyase activity | IEP | Predicted GO |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Predicted GO |
| MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
| CC | GO:0030127 | COPII vesicle coat | IEP | Predicted GO |
| MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
| MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Predicted GO |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Predicted GO |
| BP | GO:0033554 | cellular response to stress | IEP | Predicted GO |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
| MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
| MF | GO:0043168 | anion binding | IEP | Predicted GO |
| BP | GO:0051716 | cellular response to stimulus | IEP | Predicted GO |
| MF | GO:0051920 | peroxiredoxin activity | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |