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  5. Solyc03g097020

Solyc03g097020


Description : AAA-type ATPase family protein


Gene families : OG_42_0001970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001970_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g097020
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
168159 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
A4A49_39242 No alias cell division control protein 48-like d 0.07 Orthogroups_2024-Update
At2g18330 No alias AAA-type ATPase family protein... 0.04 Orthogroups_2024-Update
At5g16930 No alias AAA-type ATPase family protein... 0.04 Orthogroups_2024-Update
Bradi3g52367 No alias AAA-type ATPase family protein 0.02 Orthogroups_2024-Update
Brara.A00229.1 No alias regulatory protein *(SBA) of mitochondrial nucleoid organization 0.06 Orthogroups_2024-Update
Brara.B00686.1 No alias regulatory protein *(SBA) of mitochondrial nucleoid organization 0.05 Orthogroups_2024-Update
Brara.E03540.1 No alias regulatory protein *(SBA) of mitochondrial nucleoid organization 0.07 Orthogroups_2024-Update
Brara.J01839.1 No alias regulatory protein *(SBA) of mitochondrial nucleoid organization 0.08 Orthogroups_2024-Update
GRMZM2G067242 No alias AAA-type ATPase family protein 0.06 Orthogroups_2024-Update
GRMZM2G069422 No alias AAA-type ATPase family protein 0.07 Orthogroups_2024-Update
Glyma.01G174000 No alias AAA-type ATPase family protein 0.04 Orthogroups_2024-Update
Glyma.11G069000 No alias AAA-type ATPase family protein 0.06 Orthogroups_2024-Update
Glyma.11G091700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.1 Orthogroups_2024-Update
Glyma.12G017700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 Orthogroups_2024-Update
Kfl01685_0010 kfl01685_0010_v1.... (at5g16930 : 132.0) AAA-type ATPase family protein;... 0.03 Orthogroups_2024-Update
LOC_Os02g47760 No alias AAA-type ATPase family protein, putative, expressed 0.02 Orthogroups_2024-Update
Mp3g01020.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Potri.001G458200 No alias AAA-type ATPase family protein 0.03 Orthogroups_2024-Update
Potri.007G023900 No alias AAA-type ATPase family protein 0.06 Orthogroups_2024-Update
Pp1s106_174V6 No alias No description available 0.03 Orthogroups_2024-Update
Seita.1G283400.1 No alias regulatory protein *(SBA) of mitochondrial nucleoid organization 0.13 Orthogroups_2024-Update
Seita.1G290000.1 No alias regulatory protein *(SBA) of mitochondrial nucleoid organization 0.15 Orthogroups_2024-Update
Sobic.004G266900.1 No alias regulatory protein *(SBA) of mitochondrial nucleoid organization 0.03 Orthogroups_2024-Update
Sobic.004G272400.1 No alias regulatory protein *(SBA) of mitochondrial nucleoid organization 0.12 Orthogroups_2024-Update
Sopen02g013720 No alias Domain of unknown function (DUF3523) 0.2 Orthogroups_2024-Update
Sopen03g027770 No alias Domain of unknown function (DUF3523) 0.16 Orthogroups_2024-Update
evm.model.contig_3464.1 No alias (at3g03060 : 297.0) P-loop containing nucleoside... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR021911 DUF3523 59 328
IPR003959 ATPase_AAA_core 395 522
No external refs found!