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  5. At4g01310

At4g01310


Description : 50S ribosomal protein L5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O04603]


Gene families : OG_42_0007175 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007175_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At4g01310
Cluster HCCA clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Bradi1g76880 No alias Ribosomal L5P family protein 0.02 Orthogroups_2024-Update
Brara.I00052.1 No alias component *(uL5c) of large plastid ribosomal-subunit proteome 0.02 Orthogroups_2024-Update
Kfl00083_0030 kfl00083_0030_v1.1 (q9muu5|rk5_mesvi : 236.0) Chloroplast 50S ribosomal... 0.02 Orthogroups_2024-Update
PSME_00011579-RA No alias (p82192|rk5_spiol : 141.0) 50S ribosomal protein L5,... 0.03 Orthogroups_2024-Update
Pp1s21_61V6 No alias ribosomal protein l5 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005665 RNA polymerase II, core complex IEP Predicted GO
CC GO:0005672 transcription factor TFIIA complex IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0009496 plastoquinol--plastocyanin reductase activity IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0034357 photosynthetic membrane IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
CC GO:0042651 thylakoid membrane IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0052880 oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR031309 Ribosomal_L5_C 139 232
IPR031310 Ribosomal_L5_N 79 135
No external refs found!