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Description : component *(SWIB) of SWI-B chromatin-remodeling complexes
Gene families : OG_42_0000976 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000976_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor: Sobic.008G107800.1 | |
| Cluster | HCAA Clusters: Cluster_113 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Brara.K00354.1 | No alias | component *(SWIB) of SWI-B chromatin-remodeling complexes | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G077088 | No alias | SWIB/MDM2 domain superfamily protein | 0.04 | Orthogroups_2024-Update | |
| GRMZM2G143788 | No alias | SWIB/MDM2 domain superfamily protein | 0.08 | Orthogroups_2024-Update | |
| GRMZM6G910222 | No alias | SWIB/MDM2 domain superfamily protein | 0.05 | Orthogroups_2024-Update | |
| LOC_Os02g03730 | No alias | SWIB/MDM2 domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| Potri.009G092200 | No alias | SWIB/MDM2 domain superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Seita.1G099300.1 | No alias | component *(SWIB) of SWI-B chromatin-remodeling complexes | 0.04 | Orthogroups_2024-Update | |
| Seita.3G355300.1 | No alias | component *(SWIB) of SWI-B chromatin-remodeling complexes | 0.07 | Orthogroups_2024-Update | |
| Seita.9G082400.1 | No alias | component *(SWIB) of SWI-B chromatin-remodeling complexes | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G028400.1 | No alias | component *(SWIB) of SWI-B chromatin-remodeling complexes | 0.04 | Orthogroups_2024-Update | |
| Solyc01g107330 | No alias | SWIB_MDM2 domain protein | 0.05 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
| MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Predicted GO |
| MF | GO:0004488 | methylenetetrahydrofolate dehydrogenase (NADP+) activity | IEP | Predicted GO |
| CC | GO:0005759 | mitochondrial matrix | IEP | Predicted GO |
| BP | GO:0006066 | alcohol metabolic process | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Predicted GO |
| MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Predicted GO |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | Predicted GO |
| CC | GO:0009507 | chloroplast | IEP | Predicted GO |
| CC | GO:0009536 | plastid | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| BP | GO:0016311 | dephosphorylation | IEP | Predicted GO |
| MF | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors | IEP | Predicted GO |
| MF | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
| MF | GO:0016887 | ATPase activity | IEP | Predicted GO |
| BP | GO:0019751 | polyol metabolic process | IEP | Predicted GO |
| CC | GO:0019867 | outer membrane | IEP | Predicted GO |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| CC | GO:0043233 | organelle lumen | IEP | Predicted GO |
| BP | GO:0043647 | inositol phosphate metabolic process | IEP | Predicted GO |
| BP | GO:0044282 | small molecule catabolic process | IEP | Predicted GO |
| BP | GO:0046164 | alcohol catabolic process | IEP | Predicted GO |
| BP | GO:0046174 | polyol catabolic process | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| BP | GO:0046838 | phosphorylated carbohydrate dephosphorylation | IEP | Predicted GO |
| BP | GO:0046855 | inositol phosphate dephosphorylation | IEP | Predicted GO |
| MF | GO:0051082 | unfolded protein binding | IEP | Predicted GO |
| MF | GO:0061505 | DNA topoisomerase II activity | IEP | Predicted GO |
| CC | GO:0070013 | intracellular organelle lumen | IEP | Predicted GO |
| BP | GO:0071103 | DNA conformation change | IEP | Predicted GO |
| BP | GO:0071545 | inositol phosphate catabolic process | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | Predicted GO |
| BP | GO:1901616 | organic hydroxy compound catabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003121 | SWIB_MDM2_domain | 72 | 145 |
| No external refs found! |