Sobic.008G129200.1


Description : component *(MCM7) of MCM replicative DNA helicase complex


Gene families : OG_42_0006411 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006411_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G129200.1
Cluster HCAA Clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
At4g02060 No alias DNA replication licensing factor MCM7... 0.07 Orthogroups_2024-Update
Bradi4g04730 No alias Minichromosome maintenance (MCM2/3/5) family protein 0.06 Orthogroups_2024-Update
Brara.C02829.1 No alias component *(MCM7) of MCM replicative DNA helicase complex 0.12 Orthogroups_2024-Update
Brara.I00125.1 No alias component *(MCM7) of MCM replicative DNA helicase complex 0.11 Orthogroups_2024-Update
Cre10.g455850 No alias Minichromosome maintenance (MCM2/3/5) family protein 0.08 Orthogroups_2024-Update
Glyma.03G219200 No alias Minichromosome maintenance (MCM2/3/5) family protein 0.19 Orthogroups_2024-Update
Glyma.19G216100 No alias Minichromosome maintenance (MCM2/3/5) family protein 0.16 Orthogroups_2024-Update
Kfl00481_0090 kfl00481_0090_v1.1 (at4g02060 : 837.0) Member of the minichromosome... 0.11 Orthogroups_2024-Update
MA_10426237g0010 No alias (at4g02060 : 1090.0) Member of the minichromosome... 0.08 Orthogroups_2024-Update
Mp2g02600.1 No alias component MCM7 of MCM replicative DNA helicase complex 0.06 Orthogroups_2024-Update
Seita.3G335500.1 No alias component *(MCM7) of MCM replicative DNA helicase complex 0.21 Orthogroups_2024-Update
Solyc01g079500 No alias Vps51/Vps67 family (components of vesicular transport)... 0.16 Orthogroups_2024-Update
Sopen01g031270 No alias MCM2/3/5 family 0.11 Orthogroups_2024-Update
evm.model.contig_490.1 No alias (at4g02060 : 555.0) Member of the minichromosome... 0.11 Orthogroups_2024-Update
evm.model.tig00000241.38 No alias (at4g02060 : 657.0) Member of the minichromosome... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
BP GO:0032508 DNA duplex unwinding IEA 16Dec
Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003896 DNA primase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006323 DNA packaging IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0007076 mitotic chromosome condensation IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009617 response to bacterium IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
BP GO:0010639 negative regulation of organelle organization IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0030261 chromosome condensation IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0033043 regulation of organelle organization IEP Predicted GO
BP GO:0033044 regulation of chromosome organization IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
CC GO:0042555 MCM complex IEP Predicted GO
BP GO:0042742 defense response to bacterium IEP Predicted GO
BP GO:0043086 negative regulation of catalytic activity IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0044092 negative regulation of molecular function IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051095 regulation of helicase activity IEP Predicted GO
BP GO:0051097 negative regulation of helicase activity IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051129 negative regulation of cellular component organization IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:0051346 negative regulation of hydrolase activity IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
BP GO:1905462 regulation of DNA duplex unwinding IEP Predicted GO
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Predicted GO
BP GO:1905774 regulation of DNA helicase activity IEP Predicted GO
BP GO:1905775 negative regulation of DNA helicase activity IEP Predicted GO
BP GO:2001251 negative regulation of chromosome organization IEP Predicted GO
InterPro domains Description Start Stop
IPR027925 MCM_N 13 134
IPR033762 MCM_OB 145 276
IPR001208 MCM_dom 316 538
No external refs found!