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  5. Sobic.008G136200.2

Sobic.008G136200.2


Description : E3 ubiquitin ligase


Gene families : OG_42_0000634 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000634_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G136200.2
Cluster HCAA Clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Bradi4g04270 No alias plant U-box 13 0.02 Orthogroups_2024-Update
GRMZM2G351387 No alias plant U-box 13 0.02 Orthogroups_2024-Update
Glyma.10G208200 No alias plant U-box 14 0.03 Orthogroups_2024-Update
Glyma.12G063700 No alias plant U-box 13 0.03 Orthogroups_2024-Update
Glyma.20G182600 No alias plant U-box 14 0.03 Orthogroups_2024-Update
HORVU7Hr1G000780.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Seita.3G327700.1 No alias E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Seita.9G452400.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.J031300.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
BP GO:0016567 protein ubiquitination IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003714 transcription corepressor activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000225 Armadillo 379 417
IPR000225 Armadillo 462 499
IPR003613 Ubox_domain 253 323
No external refs found!