Solyc03g097160

Description : Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** A0A0K9NPY2_ZOSMR)

Gene families : OG_42_0001305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc03g097160
Cluster	HCCA clusters: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
80645	No alias	Transducin family protein / WD-40 repeat family protein	0.03	Orthogroups_2024-Update
At5g16750	No alias	Transducin family protein / WD-40 repeat family protein...	0.09	Orthogroups_2024-Update
Bradi5g20040	No alias	Transducin family protein / WD-40 repeat family protein	0.2	Orthogroups_2024-Update
Brara.J01854.1	No alias	Unknown function	0.05	Orthogroups_2024-Update
Brara.J02073.1	No alias	SSU processome assembly factor *(TOZ)	0.1	Orthogroups_2024-Update
Cre07.g344050	No alias	Transducin family protein / WD-40 repeat family protein	0.08	Orthogroups_2024-Update
GRMZM2G014276	No alias	Transducin family protein / WD-40 repeat family protein	0.03	Orthogroups_2024-Update
Glyma.05G038000	No alias	Transducin family protein / WD-40 repeat family protein	0.04	Orthogroups_2024-Update
Glyma.17G089100	No alias	Transducin family protein / WD-40 repeat family protein	0.06	Orthogroups_2024-Update
HORVU2Hr1G106110.11	No alias	SSU processome assembly factor *(TOZ)	0.06	Orthogroups_2024-Update
Kfl00871_0040	kfl00871_0040_v1.1	(at5g16750 : 795.0) Encodes a nucleolar localized WD-40...	0.04	Orthogroups_2024-Update
Mp8g08070.1	No alias	SSU processome assembly factor (TOZ)	0.04	Orthogroups_2024-Update
Potri.013G079600	No alias	Transducin family protein / WD-40 repeat family protein	0.03	Orthogroups_2024-Update
Pp1s301_39V6	No alias	wd40-repeat protein	0.1	Orthogroups_2024-Update
Seita.7G219600.1	No alias	SSU processome assembly factor *(TOZ)	0.15	Orthogroups_2024-Update
Sobic.006G198600.1	No alias	SSU processome assembly factor *(TOZ)	0.15	Orthogroups_2024-Update
Sopen03g027900	No alias	WD domain, G-beta repeat	0.18	Orthogroups_2024-Update
evm.model.contig_3462.1	No alias	(at5g16750 : 203.0) Encodes a nucleolar localized WD-40...	0.07	Orthogroups_2024-Update
evm.model.tig00000704.60	No alias	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
evm.model.tig00000704.61	No alias	(at5g16750 : 313.0) Encodes a nucleolar localized WD-40...	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	InterProScan predictions
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	InterProScan predictions
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
CC	GO:0005732	small nucleolar ribonucleoprotein complex	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
CC	GO:0034457	Mpp10 complex	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
CC	GO:0044452	nucleolar part	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	400	440
IPR001680	WD40_repeat	581	618
IPR001680	WD40_repeat	57	88
IPR001680	WD40_repeat	504	534
IPR001680	WD40_repeat	136	174
IPR001680	WD40_repeat	446	483
IPR001680	WD40_repeat	93	130
IPR001680	WD40_repeat	545	576
IPR013934	SSU_processome_Utp13	683	816

External Links

No external refs found!

Solyc03g097160

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation