1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.008G163400.1

Sobic.008G163400.1


Description : Unknown function


Gene families : OG_42_0008601 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008601_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G163400.1
Cluster HCAA Clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Bradi1g51400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Brara.E00931.1 No alias RNA editing factor *(COD1) 0.03 Orthogroups_2024-Update
GRMZM2G162988 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Seita.3G384600.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Seita.4G027600.1 No alias RNA editing factor *(COD1) 0.03 Orthogroups_2024-Update
Sopen04g010110 No alias PPR repeat 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006772 thiamine metabolic process IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009228 thiamine biosynthetic process IEP Predicted GO
CC GO:0030896 checkpoint clamp complex IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042723 thiamine-containing compound metabolic process IEP Predicted GO
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 159 188
IPR002885 Pentatricopeptide_repeat 223 251
IPR002885 Pentatricopeptide_repeat 7 35
IPR002885 Pentatricopeptide_repeat 523 547
IPR002885 Pentatricopeptide_repeat 287 315
IPR002885 Pentatricopeptide_repeat 259 282
IPR002885 Pentatricopeptide_repeat 71 95
IPR002885 Pentatricopeptide_repeat 38 68
IPR002885 Pentatricopeptide_repeat 101 130
IPR002885 Pentatricopeptide_repeat 132 158
IPR002885 Pentatricopeptide_repeat 447 495
IPR002885 Pentatricopeptide_repeat 191 220
IPR002885 Pentatricopeptide_repeat 346 395
No external refs found!