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  5. Sobic.009G162800.1

Sobic.009G162800.1


Description : lignin laccase & EC_1.10 oxidoreductase acting on diphenol or related substance as donor


Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G162800.1
Cluster HCAA Clusters: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Bradi1g65100 No alias laccase 5 0.03 Orthogroups_2024-Update
Bradi2g23350 No alias laccase 17 0.01 Orthogroups_2024-Update
Bradi2g53800 No alias laccase 12 0.04 Orthogroups_2024-Update
Bradi2g54680 No alias laccase 17 0.04 Orthogroups_2024-Update
Glyma.14G198900 No alias laccase 3 0.02 Orthogroups_2024-Update
Glyma.18G193300 No alias laccase 7 0.02 Orthogroups_2024-Update
HORVU3Hr1G086160.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
LOC_Os01g27700 No alias laccase precursor protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00001502-RA No alias (at2g38080 : 615.0) Encodes a protein with similarity to... 0.03 Orthogroups_2024-Update
PSME_00007029-RA No alias (at5g05390 : 758.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
PSME_00028271-RA No alias (at5g05390 : 745.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
PSME_00031239-RA No alias (at1g18140 : 634.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
PSME_00031560-RA No alias (at5g05390 : 678.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00033093-RA No alias (at2g40370 : 637.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
PSME_00044158-RA No alias (at2g40370 : 673.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
Potri.009G102700 No alias laccase 11 0.03 Orthogroups_2024-Update
Seita.3G297100.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
Seita.4G282400.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
Sobic.005G005800.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
Solyc10g085090 No alias Laccase (AHRD V3.3 *** P93366_TOBAC) 0.03 Orthogroups_2024-Update
Sopen02g029810 No alias Multicopper oxidase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA 16Dec
MF GO:0016491 oxidoreductase activity IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0015939 pantothenate metabolic process IEP Predicted GO
BP GO:0015940 pantothenate biosynthetic process IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
InterPro domains Description Start Stop
IPR001117 Cu-oxidase 165 316
IPR011706 Cu-oxidase_2 440 567
IPR011707 Cu-oxidase_3 40 153
No external refs found!