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  5. Sobic.009G184200.1

Sobic.009G184200.1


Description : component *(CAP-C/SMC4) of condensin I/II complex


Gene families : OG_42_0006183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006183_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G184200.1
Cluster HCAA Clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Brara.F03113.1 No alias component *(CAP-C/SMC4) of condensin I/II complex 0.03 Orthogroups_2024-Update
MA_317249g0010 No alias (at5g48600 : 395.0) member of SMC subfamily; structural... 0.04 Orthogroups_2024-Update
Seita.3G192100.1 No alias component *(CAP-C/SMC4) of condensin I/II complex 0.05 Orthogroups_2024-Update
Solyc02g087980 No alias Structural maintenance of chromosomes protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Sopen02g032720 No alias RecF/RecN/SMC N terminal domain 0.03 Orthogroups_2024-Update
evm.model.tig00000711.41 No alias (at5g48600 : 304.0) member of SMC subfamily; structural... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0005694 chromosome IEA 16Dec
BP GO:0051276 chromosome organization IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0032392 DNA geometric change IEP Predicted GO
BP GO:0032508 DNA duplex unwinding IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR010935 SMC_hinge 554 672
IPR003395 RecF/RecN/SMC_N 24 1227
No external refs found!