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Description : plastidial splicing factor *(EMB1270)
Gene families : OG_42_0005523 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005523_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor: Sobic.010G074100.1 | |
| Cluster | HCAA Clusters: Cluster_65 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi1g46560 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | Orthogroups_2024-Update | |
| GRMZM2G053196 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.11G013700 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| PSME_00044615-RA | No alias | (at3g18110 : 1099.0) embryo defective 1270 (EMB1270);... | 0.02 | Orthogroups_2024-Update | |
| Seita.4G038900.1 | No alias | plastidial splicing factor *(EMB1270) | 0.07 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000290 | deadenylation-dependent decapping of nuclear-transcribed mRNA | IEP | Predicted GO |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Predicted GO |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
| MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Predicted GO |
| MF | GO:0004366 | glycerol-3-phosphate O-acyltransferase activity | IEP | Predicted GO |
| MF | GO:0004514 | nicotinate-nucleotide diphosphorylase (carboxylating) activity | IEP | Predicted GO |
| CC | GO:0005856 | cytoskeleton | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006259 | DNA metabolic process | IEP | Predicted GO |
| BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
| BP | GO:0006401 | RNA catabolic process | IEP | Predicted GO |
| BP | GO:0006402 | mRNA catabolic process | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Predicted GO |
| BP | GO:0009435 | NAD biosynthetic process | IEP | Predicted GO |
| MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
| BP | GO:0019674 | NAD metabolic process | IEP | Predicted GO |
| CC | GO:0019898 | extrinsic component of membrane | IEP | Predicted GO |
| BP | GO:0043085 | positive regulation of catalytic activity | IEP | Predicted GO |
| BP | GO:0044093 | positive regulation of molecular function | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| BP | GO:0055085 | transmembrane transport | IEP | Predicted GO |
| MF | GO:0061505 | DNA topoisomerase II activity | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR033443 | PPR_long | 940 | 1068 |
| IPR002885 | Pentatricopeptide_repeat | 457 | 516 |
| IPR002885 | Pentatricopeptide_repeat | 283 | 342 |
| IPR002885 | Pentatricopeptide_repeat | 360 | 384 |
| IPR002885 | Pentatricopeptide_repeat | 785 | 811 |
| IPR002885 | Pentatricopeptide_repeat | 1101 | 1129 |
| IPR002885 | Pentatricopeptide_repeat | 858 | 883 |
| IPR002885 | Pentatricopeptide_repeat | 716 | 744 |
| IPR002885 | Pentatricopeptide_repeat | 399 | 447 |
| IPR002885 | Pentatricopeptide_repeat | 224 | 268 |
| No external refs found! |