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  5. Sobic.010G231100.2

Sobic.010G231100.2


Description : ligand-gated cation channel *(GLR)


Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G231100.2
Cluster HCAA Clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
A4A49_16225 No alias glutamate receptor 3.6 0.03 Orthogroups_2024-Update
A4A49_28967 No alias glutamate receptor 2.8 0.03 Orthogroups_2024-Update
A4A49_28968 No alias glutamate receptor 2.8 0.04 Orthogroups_2024-Update
At2g32390 No alias Glutamate receptor 3.5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW97] 0.03 Orthogroups_2024-Update
Bradi1g26030 No alias glutamate receptor 3.4 0.03 Orthogroups_2024-Update
Bradi4g30850 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Brara.G00725.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Brara.I05466.1 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
Brara.J00340.1 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
GRMZM2G139933 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
HORVU0Hr1G036590.3 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
HORVU2Hr1G045730.11 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
HORVU2Hr1G049510.4 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
HORVU5Hr1G063420.2 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
HORVU6Hr1G009520.2 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
HORVU7Hr1G031700.13 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
MA_9224859g0010 No alias (at4g35290 : 187.0) Encodes a putative glutamate... 0.04 Orthogroups_2024-Update
Potri.006G172100 No alias glutamate receptor 2.8 0.03 Orthogroups_2024-Update
Potri.018G012300 No alias glutamate receptor 2.8 0.02 Orthogroups_2024-Update
Seita.1G009400.1 No alias ligand-gated cation channel *(GLR) 0.01 Orthogroups_2024-Update
Seita.4G260500.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Seita.4G260900.1 No alias ligand-gated cation channel *(GLR) 0.08 Orthogroups_2024-Update
Seita.J003700.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Sopen06g022620 No alias Receptor family ligand binding region 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0044183 protein binding involved in protein folding IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
BP GO:0110102 chloroplast ribulose bisphosphate carboxylase complex assembly IEP Predicted GO
InterPro domains Description Start Stop
IPR001320 Iontro_rcpt 813 841
IPR001828 ANF_lig-bd_rcpt 51 409
IPR001638 Solute-binding_3/MltF_N 492 812
No external refs found!