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  5. Seita.1G042600.1

Seita.1G042600.1


Description : regulatory component *(RPT6) of 26S proteasome


Gene families : OG_42_0003229 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003229_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G042600.1
Cluster HCAA Clusters: Cluster_244

Target Alias Description ECC score Gene Family Method Actions
Bradi1g36830 No alias regulatory particle triple-A ATPase 6A 0.04 Orthogroups_2024-Update
Bradi3g07700 No alias regulatory particle triple-A ATPase 6A 0.03 Orthogroups_2024-Update
Brara.B00858.1 No alias regulatory component *(RPT6) of 26S proteasome 0.04 Orthogroups_2024-Update
Brara.J01595.1 No alias regulatory component *(RPT6) of 26S proteasome 0.05 Orthogroups_2024-Update
Cre04.g216600 No alias regulatory particle triple-A ATPase 6A 0.08 Orthogroups_2024-Update
Glyma.07G002200 No alias regulatory particle triple-A ATPase 6A 0.03 Orthogroups_2024-Update
HORVU7Hr1G084550.2 No alias regulatory component *(RPT6) of 26S proteasome 0.03 Orthogroups_2024-Update
Kfl00020_0400 kfl00020_0400_v1.1 (at5g19990 : 667.0) 26S proteasome AAA-ATPase subunit;... 0.03 Orthogroups_2024-Update
MA_10427013g0010 No alias (at5g19990 : 730.0) 26S proteasome AAA-ATPase subunit;... 0.02 Orthogroups_2024-Update
Mp1g04290.1 No alias regulatory component RPT6 of 26S proteasome 0.03 Orthogroups_2024-Update
Potri.010G098300 No alias regulatory particle triple-A ATPase 6A 0.04 Orthogroups_2024-Update
Pp1s245_17V6 No alias 26s proteasome aaa-atpase subunit rpt6a 0.02 Orthogroups_2024-Update
Sobic.004G086600.1 No alias regulatory component *(RPT6) of 26S proteasome 0.07 Orthogroups_2024-Update
evm.model.tig00000792.28 No alias (at5g19990 : 630.0) 26S proteasome AAA-ATPase subunit;... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
MF GO:0016887 ATPase activity IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
CC GO:0000502 proteasome complex IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009894 regulation of catabolic process IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0042176 regulation of protein catabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1905369 endopeptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR032501 Prot_ATP_ID_OB 88 143
IPR003959 ATPase_AAA_core 201 334
No external refs found!