1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.1G096200.1

Seita.1G096200.1


Description : alpha-type-6 component *(PAF) of 26S proteasome & EC_3.4 hydrolase acting on peptide bond (peptidase)


Gene families : OG_42_0004453 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004453_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G096200.1
Cluster HCAA Clusters: Cluster_244

Target Alias Description ECC score Gene Family Method Actions
A4A49_12781 No alias proteasome subunit alpha type-1-a 0.04 Orthogroups_2024-Update
At1g47250 No alias Proteasome subunit alpha type-1-B... 0.03 Orthogroups_2024-Update
Brara.B02476.1 No alias alpha-type-6 component *(PAF) of 26S proteasome & EC_3.4... 0.05 Orthogroups_2024-Update
Brara.I01753.1 No alias alpha-type-6 component *(PAF) of 26S proteasome & EC_3.4... 0.04 Orthogroups_2024-Update
Kfl00039_0350 kfl00039_0350_v1.1 (at1g47250 : 303.0) Encodes 20S proteasome subunit PAF2... 0.02 Orthogroups_2024-Update
Mp4g13080.1 No alias component alpha type-6 of 26S proteasome 0.07 Orthogroups_2024-Update
Potri.005G229200 No alias proteasome alpha subunit F1 0.04 Orthogroups_2024-Update
Pp1s4_331V6 No alias proteasome subunit alpha type 1 0.03 Orthogroups_2024-Update
Sobic.004G032000.1 No alias alpha-type-6 component *(PAF) of 26S proteasome & EC_3.4... 0.07 Orthogroups_2024-Update
Sopen04g034180 No alias Proteasome subunit 0.04 Orthogroups_2024-Update
evm.model.tig00000217.21 No alias (at5g42790 : 172.0) encodes a protein with extensive... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005839 proteasome core complex IEA 16Dec
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA 16Dec
CC GO:0019773 proteasome core complex, alpha-subunit complex IEA 16Dec
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004659 prenyltransferase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
CC GO:0005856 cytoskeleton IEP Predicted GO
CC GO:0005885 Arp2/3 protein complex IEP Predicted GO
BP GO:0007015 actin filament organization IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008318 protein prenyltransferase activity IEP Predicted GO
BP GO:0010638 positive regulation of organelle organization IEP Predicted GO
CC GO:0015629 actin cytoskeleton IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
BP GO:0018342 protein prenylation IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0030832 regulation of actin filament length IEP Predicted GO
BP GO:0030833 regulation of actin filament polymerization IEP Predicted GO
BP GO:0030838 positive regulation of actin filament polymerization IEP Predicted GO
BP GO:0031334 positive regulation of protein complex assembly IEP Predicted GO
BP GO:0032271 regulation of protein polymerization IEP Predicted GO
BP GO:0032273 positive regulation of protein polymerization IEP Predicted GO
BP GO:0032535 regulation of cellular component size IEP Predicted GO
BP GO:0032956 regulation of actin cytoskeleton organization IEP Predicted GO
BP GO:0032970 regulation of actin filament-based process IEP Predicted GO
BP GO:0033043 regulation of organelle organization IEP Predicted GO
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
BP GO:0043254 regulation of protein complex assembly IEP Predicted GO
BP GO:0044087 regulation of cellular component biogenesis IEP Predicted GO
BP GO:0044089 positive regulation of cellular component biogenesis IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045010 actin nucleation IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0048522 positive regulation of cellular process IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051130 positive regulation of cellular component organization IEP Predicted GO
BP GO:0051493 regulation of cytoskeleton organization IEP Predicted GO
BP GO:0051495 positive regulation of cytoskeleton organization IEP Predicted GO
MF GO:0070403 NAD+ binding IEP Predicted GO
BP GO:0090066 regulation of anatomical structure size IEP Predicted GO
BP GO:0097354 prenylation IEP Predicted GO
BP GO:0097435 supramolecular fiber organization IEP Predicted GO
BP GO:0110053 regulation of actin filament organization IEP Predicted GO
BP GO:1902903 regulation of supramolecular fiber organization IEP Predicted GO
BP GO:1902905 positive regulation of supramolecular fiber organization IEP Predicted GO
InterPro domains Description Start Stop
IPR000426 Proteasome_asu_N 6 28
IPR001353 Proteasome_sua/b 29 214
No external refs found!