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  5. Seita.1G297300.1

Seita.1G297300.1


Description : component *(eL31) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001913 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001913_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G297300.1
Cluster HCAA Clusters: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
268515 No alias Ribosomal protein L31e family protein 0.18 Orthogroups_2024-Update
A4A49_04515 No alias 60s ribosomal protein l31 0.08 Orthogroups_2024-Update
At2g19740 No alias 60S ribosomal protein L31-1... 0.02 Orthogroups_2024-Update
At5g56710 No alias 60S ribosomal protein L31-3... 0.02 Orthogroups_2024-Update
Bradi3g39870 No alias Ribosomal protein L31e family protein 0.21 Orthogroups_2024-Update
Bradi3g53460 No alias Ribosomal protein L31e family protein 0.26 Orthogroups_2024-Update
Brara.B01256.1 No alias component *(eL31) of large ribosomal-subunit (LSU) proteome 0.24 Orthogroups_2024-Update
Brara.I04723.1 No alias component *(eL31) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Brara.J01097.1 No alias component *(eL31) of large ribosomal-subunit (LSU) proteome 0.23 Orthogroups_2024-Update
Cre12.g489153 No alias Ribosomal protein L31e family protein 0.17 Orthogroups_2024-Update
GRMZM2G074085 No alias Ribosomal protein L31e family protein 0.12 Orthogroups_2024-Update
Glyma.01G004300 No alias Ribosomal protein L31e family protein 0.27 Orthogroups_2024-Update
Glyma.05G223800 No alias Ribosomal protein L31e family protein 0.07 Orthogroups_2024-Update
Glyma.07G127500 No alias Ribosomal protein L31e family protein 0.25 Orthogroups_2024-Update
Glyma.08G030900 No alias Ribosomal protein L31e family protein 0.09 Orthogroups_2024-Update
HORVU6Hr1G070670.1 No alias component *(eL31) of large ribosomal-subunit (LSU) proteome 0.18 Orthogroups_2024-Update
HORVU7Hr1G050170.1 No alias component *(eL31) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Kfl00006_0140 kfl00006_0140_v1.1 (at2g19740 : 154.0) Ribosomal protein L31e family... 0.09 Orthogroups_2024-Update
MA_14317g0010 No alias (q9mav7|rl31_pangi : 197.0) 60S ribosomal protein L31 -... 0.04 Orthogroups_2024-Update
Mp7g18320.1 No alias component RPL31 of LSU proteome component 0.07 Orthogroups_2024-Update
PSME_00053840-RA No alias (q9mav7|rl31_pangi : 196.0) 60S ribosomal protein L31 -... 0.04 Orthogroups_2024-Update
Potri.001G269600 No alias Ribosomal protein L31e family protein 0.12 Orthogroups_2024-Update
Potri.009G064100 No alias Ribosomal protein L31e family protein 0.16 Orthogroups_2024-Update
Potri.018G070100 No alias Ribosomal protein L31e family protein 0.03 Orthogroups_2024-Update
Pp1s28_306V6 No alias 60s ribosomal protein l31a 0.08 Orthogroups_2024-Update
Pp1s30_365V6 No alias 60s ribosomal protein l31a 0.25 Orthogroups_2024-Update
Pp1s50_89V6 No alias 60s ribosomal protein l31a 0.23 Orthogroups_2024-Update
Pp1s58_106V6 No alias 60s ribosomal protein l31a 0.18 Orthogroups_2024-Update
Pp1s79_255V6 No alias 60s ribosomal protein l31a 0.19 Orthogroups_2024-Update
Sobic.004G259700.1 No alias component *(eL31) of large ribosomal-subunit (LSU) proteome 0.4 Orthogroups_2024-Update
Sobic.007G211700.1 No alias component *(eL31) of large ribosomal-subunit (LSU) proteome 0.2 Orthogroups_2024-Update
Solyc12g008720 No alias 60S ribosomal protein L31 (AHRD V3.3 *** W9QLF2_9ROSA) 0.28 Orthogroups_2024-Update
Sopen05g003860 No alias Ribosomal protein L31e 0.04 Orthogroups_2024-Update
Sopen12g003650 No alias Ribosomal protein L31e 0.25 Orthogroups_2024-Update
evm.model.contig_477.12 No alias (q9mav7|rl31_pangi : 120.0) 60S ribosomal protein L31 -... 0.28 Orthogroups_2024-Update
evm.model.tig00020703.20 No alias (q9mav7|rl31_pangi : 155.0) 60S ribosomal protein L31 -... 0.15 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000054 Ribosomal_L31e 14 95
No external refs found!