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  5. At4g13890

At4g13890


Description : Serine hydroxymethyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM4]


Gene families : OG_42_0000626 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000626_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At4g13890
Cluster HCCA clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Bradi4g08097 No alias serine hydroxymethyltransferase 4 0.03 Orthogroups_2024-Update
Brara.A00543.1 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 Orthogroups_2024-Update
Brara.H00475.1 No alias serine hydroxymethyltransferase *(SHM) & EC_2.1... 0.03 Orthogroups_2024-Update
Cre06.g293950 No alias serine hydroxymethyltransferase 4 0.02 Orthogroups_2024-Update
HORVU3Hr1G082070.3 No alias serine hydroxymethyltransferase *(SHM) & serine... 0.03 Orthogroups_2024-Update
LOC_Os01g65410 No alias serine hydroxymethyltransferase, mitochondrial... 0.03 Orthogroups_2024-Update
LOC_Os12g22030 No alias serine hydroxymethyltransferase, mitochondrial... 0.03 Orthogroups_2024-Update
Potri.001G320400 No alias serine hydroxymethyltransferase 4 0.03 Orthogroups_2024-Update
Seita.5G398800.1 No alias serine hydroxymethyltransferase *(SHM) & serine... 0.05 Orthogroups_2024-Update
Seita.8G115500.1 No alias serine hydroxymethyltransferase *(SHM) & EC_2.1... 0.03 Orthogroups_2024-Update
Solyc05g053810 No alias Serine hydroxymethyltransferase (AHRD V3.3 *** M1BAA6_SOLTU) 0.04 Orthogroups_2024-Update
Sopen12g031830 No alias Serine hydroxymethyltransferase 0.03 Orthogroups_2024-Update
evm.model.tig00001130.31 No alias (at4g13930 : 555.0) Encodes a serine... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004619 phosphoglycerate mutase activity IEP Predicted GO
MF GO:0004819 glutamine-tRNA ligase activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006007 glucose catabolic process IEP Predicted GO
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008531 riboflavin kinase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016681 oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0019320 hexose catabolic process IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0046365 monosaccharide catabolic process IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 14 411
No external refs found!