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Description : component *(LHCq) of LHC-II complex
Gene families : OG_42_0000070 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000070_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica: Seita.2G166700.1 | |
| Cluster | HCAA Clusters: Cluster_118 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 270427 | No alias | light-harvesting chlorophyll-protein complex I subunit A4 | 0.03 | Orthogroups_2024-Update | |
| 407444 | No alias | light-harvesting chlorophyll B-binding protein 3 | 0.03 | Orthogroups_2024-Update | |
| At1g19150 | No alias | Photosystem I chlorophyll a/b-binding protein 6,... | 0.02 | Orthogroups_2024-Update | |
| At1g29910 | No alias | Chlorophyll a-b binding protein 3, chloroplastic... | 0.03 | Orthogroups_2024-Update | |
| At1g76570 | No alias | Chlorophyll a-b binding protein 7, chloroplastic... | 0.03 | Orthogroups_2024-Update | |
| At3g27690 | No alias | Chlorophyll a-b binding protein, chloroplastic... | 0.04 | Orthogroups_2024-Update | |
| At3g47470 | No alias | Chlorophyll a-b binding protein, chloroplastic... | 0.03 | Orthogroups_2024-Update | |
| Brara.C04035.1 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.03 | Orthogroups_2024-Update | |
| Brara.D02090.1 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.03 | Orthogroups_2024-Update | |
| Brara.E00980.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.E00982.1 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.03 | Orthogroups_2024-Update | |
| Brara.G01647.1 | No alias | component *(LHCa1) of LHC-I complex | 0.03 | Orthogroups_2024-Update | |
| Brara.I03747.1 | No alias | component *(LHCa1) of LHC-I complex | 0.03 | Orthogroups_2024-Update | |
| Brara.J00907.1 | No alias | component *(LHCb1/2/3) of LHC-II complex | 0.03 | Orthogroups_2024-Update | |
| Brara.K00763.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Cre10.g454734 | No alias | photosystem I light harvesting complex gene 3 | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G131489 | No alias | Chlorophyll A-B binding family protein | 0.03 | Orthogroups_2024-Update | |
| LOC_Os02g52650 | No alias | chlorophyll A-B binding protein, putative, expressed | 0.07 | Orthogroups_2024-Update | |
| LOC_Os07g37550 | No alias | chlorophyll A-B binding protein, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os09g12540 | No alias | chlorophyll A-B binding protein, putative, expressed | 0.05 | Orthogroups_2024-Update | |
| Mp1g29620.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.03 | Orthogroups_2024-Update | |
| Mp7g05980.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.02 | Orthogroups_2024-Update | |
| Mp7g06720.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.03 | Orthogroups_2024-Update | |
| Mp7g06750.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.02 | Orthogroups_2024-Update | |
| Mp7g06770.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.02 | Orthogroups_2024-Update | |
| Mp8g12010.1 | No alias | component LHCq of LHC-II complex | 0.04 | Orthogroups_2024-Update | |
| Potri.003G020400 | No alias | light harvesting complex photosystem II subunit 6 | 0.02 | Orthogroups_2024-Update | |
| Potri.014G029700 | No alias | photosystem I light harvesting complex gene 5 | 0.03 | Orthogroups_2024-Update | |
| Potri.019G063100 | No alias | light harvesting complex of photosystem II 5 | 0.02 | Orthogroups_2024-Update | |
| Pp1s13_200V6 | No alias | chlorophyll a b binding | 0.02 | Orthogroups_2024-Update | |
| Pp1s182_81V6 | No alias | chlorophyll a b binding | 0.03 | Orthogroups_2024-Update | |
| Pp1s19_13V6 | No alias | light-harvesting complex ii protein lhcb2 | 0.02 | Orthogroups_2024-Update | |
| Pp1s215_109V6 | No alias | chlorophyll a b binding | 0.01 | Orthogroups_2024-Update | |
| Pp1s76_196V6 | No alias | chlorophyll a b binding | 0.02 | Orthogroups_2024-Update | |
| Sobic.002G159100.1 | No alias | component *(LHCq) of LHC-II complex | 0.03 | Orthogroups_2024-Update | |
| Solyc02g070990 | No alias | Chlorophyll a-b binding protein, chloroplastic (AHRD... | 0.03 | Orthogroups_2024-Update | |
| Solyc06g069730 | No alias | chlorophyll a-b binding protein Cab12 | 0.03 | Orthogroups_2024-Update | |
| Solyc07g047850 | No alias | Chlorophyll a-b binding protein, chloroplastic (AHRD... | 0.03 | Orthogroups_2024-Update | |
| Solyc12g006140 | No alias | Cab-5 gene encoding chlorophyll a/b-binding protein | 0.03 | Orthogroups_2024-Update | |
| Solyc12g009200 | No alias | Chlorophyll a-b binding protein, chloroplastic (AHRD... | 0.02 | Orthogroups_2024-Update | |
| Sopen12g004150 | No alias | Chlorophyll A-B binding protein | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000096 | sulfur amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0000097 | sulfur amino acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0001505 | regulation of neurotransmitter levels | IEP | Predicted GO |
| MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Predicted GO |
| MF | GO:0004375 | glycine dehydrogenase (decarboxylating) activity | IEP | Predicted GO |
| MF | GO:0004560 | alpha-L-fucosidase activity | IEP | Predicted GO |
| MF | GO:0004602 | glutathione peroxidase activity | IEP | Predicted GO |
| MF | GO:0004852 | uroporphyrinogen-III synthase activity | IEP | Predicted GO |
| MF | GO:0005315 | inorganic phosphate transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0005509 | calcium ion binding | IEP | Predicted GO |
| BP | GO:0006534 | cysteine metabolic process | IEP | Predicted GO |
| BP | GO:0006535 | cysteine biosynthetic process from serine | IEP | Predicted GO |
| BP | GO:0006544 | glycine metabolic process | IEP | Predicted GO |
| BP | GO:0006546 | glycine catabolic process | IEP | Predicted GO |
| BP | GO:0006563 | L-serine metabolic process | IEP | Predicted GO |
| BP | GO:0006694 | steroid biosynthetic process | IEP | Predicted GO |
| BP | GO:0006790 | sulfur compound metabolic process | IEP | Predicted GO |
| BP | GO:0006817 | phosphate ion transport | IEP | Predicted GO |
| BP | GO:0008202 | steroid metabolic process | IEP | Predicted GO |
| MF | GO:0009001 | serine O-acetyltransferase activity | IEP | Predicted GO |
| BP | GO:0009063 | cellular amino acid catabolic process | IEP | Predicted GO |
| BP | GO:0009069 | serine family amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0009070 | serine family amino acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0009071 | serine family amino acid catabolic process | IEP | Predicted GO |
| MF | GO:0015035 | protein disulfide oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0015036 | disulfide oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015928 | fucosidase activity | IEP | Predicted GO |
| BP | GO:0016054 | organic acid catabolic process | IEP | Predicted GO |
| BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Predicted GO |
| MF | GO:0016407 | acetyltransferase activity | IEP | Predicted GO |
| MF | GO:0016412 | serine O-acyltransferase activity | IEP | Predicted GO |
| MF | GO:0016413 | O-acetyltransferase activity | IEP | Predicted GO |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Predicted GO |
| MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Predicted GO |
| MF | GO:0016642 | oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor | IEP | Predicted GO |
| MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | Predicted GO |
| MF | GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | IEP | Predicted GO |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Predicted GO |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predicted GO |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Predicted GO |
| BP | GO:0019344 | cysteine biosynthetic process | IEP | Predicted GO |
| CC | GO:0019898 | extrinsic component of membrane | IEP | Predicted GO |
| BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
| BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Predicted GO |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Predicted GO |
| BP | GO:0042133 | neurotransmitter metabolic process | IEP | Predicted GO |
| BP | GO:0042135 | neurotransmitter catabolic process | IEP | Predicted GO |
| MF | GO:0044183 | protein binding involved in protein folding | IEP | Predicted GO |
| BP | GO:0044272 | sulfur compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0046395 | carboxylic acid catabolic process | IEP | Predicted GO |
| MF | GO:0050661 | NADP binding | IEP | Predicted GO |
| BP | GO:0110102 | chloroplast ribulose bisphosphate carboxylase complex assembly | IEP | Predicted GO |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Predicted GO |
| BP | GO:1901606 | alpha-amino acid catabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 114 | 289 |
| No external refs found! |