1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.2G373100.1

Seita.2G373100.1


Description : RNA editing factor *(OTP90)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G373100.1
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
101093 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
134463 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
A4A49_17130 No alias pentatricopeptide repeat-containing protein dot4, chloroplastic 0.02 Orthogroups_2024-Update
Bradi1g06766 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g20230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g20737 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g36010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Orthogroups_2024-Update
Bradi1g38705 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g47170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Bradi1g68870 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g37360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Bradi2g42710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g45110 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Bradi3g05000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Bradi3g29450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g37120 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Orthogroups_2024-Update
Bradi3g37252 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Orthogroups_2024-Update
Bradi3g47510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g52870 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
Bradi3g55520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g15307 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g20810 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g28137 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g42160 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 Orthogroups_2024-Update
Bradi5g12970 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi5g13537 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
Brara.E00324.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.J02104.1 No alias RNA editing factor *(RARE1) 0.03 Orthogroups_2024-Update
GRMZM2G000674 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G019689 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G020008 No alias mitochondrial RNAediting factor 1 0.03 Orthogroups_2024-Update
GRMZM2G031588 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G060337 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G060536 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G073017 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G103078 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G144071 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G168170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G168378 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G331779 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G430710 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G456114 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G474929 No alias mitochondrial editing factor 21 0.02 Orthogroups_2024-Update
GRMZM5G862936 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G035300.1 No alias RNA editing factor *(OTP90) 0.07 Orthogroups_2024-Update
HORVU4Hr1G009150.1 No alias Unknown function 0.06 Orthogroups_2024-Update
HORVU4Hr1G029060.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G064880.2 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_10426261g0020 No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_291996g0010 No alias (at1g11290 : 549.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_322292g0010 No alias (at4g18750 : 684.0) Encodes a pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
MA_4503g0010 No alias (at2g27610 : 599.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_470679g0010 No alias (at3g24000 : 433.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00025245-RA No alias (at3g03580 : 656.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00031833-RA No alias (at3g13770 : 501.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00035450-RA No alias (at4g33990 : 517.0) embryo defective 2758 (EMB2758);... 0.03 Orthogroups_2024-Update
PSME_00055422-RA No alias (at2g13600 : 420.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
Potri.001G019500 No alias SLOW GROWTH 1 0.03 Orthogroups_2024-Update
Potri.002G239600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G031600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G124400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G237000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.012G048800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G083900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G091600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G205700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.1G215700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G244400.1 No alias RNA editing factor *(MEF32) 0.05 Orthogroups_2024-Update
Seita.4G046900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G514800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G069300.2 No alias RNA editing factor *(DEK36) 0.07 Orthogroups_2024-Update
Sobic.001G149100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G151300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G212200.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.001G282300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G312700.1 No alias RNA editing factor *(MEF25) 0.05 Orthogroups_2024-Update
Sobic.001G347100.2 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.001G436600.3 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G444200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G034400.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.002G084400.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Sobic.002G111700.6 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.002G172500.3 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.002G200500.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G240900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G292300.2 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.002G358900.3 No alias RNA editing factor *(OTP90) 0.09 Orthogroups_2024-Update
Sobic.002G389200.2 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.003G047400.1 No alias RNA editing factor *(OTP81) 0.06 Orthogroups_2024-Update
Sobic.003G109000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G237100.2 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.003G333200.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.004G025100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G051600.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.004G053100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G141600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G174800.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G217900.2 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.004G282000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G290400.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.004G312000.1 No alias RNA editing factor *(CLB19) 0.07 Orthogroups_2024-Update
Sobic.005G008400.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G020000.7 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.005G110550.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G210700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.006G069100.3 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.006G146400.4 No alias RNA editing factor *(MEF12) 0.06 Orthogroups_2024-Update
Sobic.006G146900.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Sobic.007G006800.3 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.007G137800.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G208400.1 No alias RNA editing factor *(REME1) 0.06 Orthogroups_2024-Update
Sobic.008G009000.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.008G041000.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.008G066900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.008G179000.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.009G116400.4 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.009G136200.1 No alias RNA editing factor *(MEF32) 0.07 Orthogroups_2024-Update
Sobic.009G155400.3 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.009G238700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.009G241200.3 No alias RNA editing factor *(ECB2/VAC1) 0.04 Orthogroups_2024-Update
Sobic.010G066900.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.010G232700.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc09g092150 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen01g041280 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen02g033370 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen03g028590 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen05g018650 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen09g033130 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g001900 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen11g029050 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
BP GO:0032392 DNA geometric change IEP Predicted GO
BP GO:0032508 DNA duplex unwinding IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 710 802
IPR002885 Pentatricopeptide_repeat 469 491
IPR002885 Pentatricopeptide_repeat 337 364
IPR002885 Pentatricopeptide_repeat 230 253
IPR002885 Pentatricopeptide_repeat 365 392
IPR002885 Pentatricopeptide_repeat 397 421
IPR002885 Pentatricopeptide_repeat 495 541
IPR002885 Pentatricopeptide_repeat 260 306
No external refs found!