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  5. Seita.2G401700.1

Seita.2G401700.1


Description : plastidial ribonucleoprotein *(CP29)


Gene families : OG_42_0002384 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002384_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G401700.1
Cluster HCAA Clusters: Cluster_201

Target Alias Description ECC score Gene Family Method Actions
Bradi1g20440 No alias chloroplast RNA-binding protein 29 0.03 Orthogroups_2024-Update
HORVU1Hr1G009390.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU3Hr1G083830.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Kfl00408_0010 kfl00408_0010_v1.1 (original description: no original description) 0.03 Orthogroups_2024-Update
LOC_Os07g43810 No alias RNA recognition motif containing protein, putative, expressed 0.06 Orthogroups_2024-Update
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.02 Orthogroups_2024-Update
Potri.006G127200 No alias chloroplast RNA-binding protein 29 0.05 Orthogroups_2024-Update
Potri.016G090700 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Pp1s260_6V6 No alias 29 kDa ribonucleoprotein A, chloroplast precursor... 0.02 Orthogroups_2024-Update
Pp1s91_60V6 No alias ribonucleoprotein a 0.02 Orthogroups_2024-Update
Sobic.002G386400.1 No alias plastidial ribonucleoprotein *(CP29) 0.06 Orthogroups_2024-Update
Sopen09g002690 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006772 thiamine metabolic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009228 thiamine biosynthetic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042723 thiamine-containing compound metabolic process IEP Predicted GO
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 80 150
IPR000504 RRM_dom 183 253
No external refs found!