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  5. Seita.3G009400.1

Seita.3G009400.1


Description : trans-splicing factor *(PPR4)


Gene families : OG_42_0006730 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006730_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G009400.1
Cluster HCAA Clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Bradi5g26670 No alias pentatricopeptide (PPR) repeat-containing protein 0.05 Orthogroups_2024-Update
Glyma.20G074200 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
LOC_Os04g58780 No alias pentatricopeptide repeat protein, putative, expressed 0.02 Orthogroups_2024-Update
Potri.010G241300 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Pp1s144_26V6 No alias pentatricopeptide repeat-containing 0.02 Orthogroups_2024-Update
Sobic.006G273400.1 No alias trans-splicing factor *(PPR4) 0.14 Orthogroups_2024-Update
Solyc11g006680 No alias Pentatricopeptide repeat-containing protein, putative... 0.05 Orthogroups_2024-Update
Sopen11g002610 No alias PPR repeat family 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Predicted GO
MF GO:0003919 FMN adenylyltransferase activity IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004814 arginine-tRNA ligase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006382 adenosine to inosine editing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006420 arginyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016553 base conversion or substitution editing IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 400 429
IPR002885 Pentatricopeptide_repeat 365 394
IPR033443 PPR_long 627 790
IPR002885 Pentatricopeptide_repeat 281 338
IPR002885 Pentatricopeptide_repeat 431 478
IPR002885 Pentatricopeptide_repeat 504 549
IPR002885 Pentatricopeptide_repeat 571 619
IPR000504 RRM_dom 116 188
No external refs found!