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  5. Seita.3G104300.1

Seita.3G104300.1


Description : E3 ubiquitin ligase *(DRR1)


Gene families : OG_42_0000431 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000431_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G104300.1
Cluster HCAA Clusters: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Brara.I01217.1 No alias E3 ubiquitin ligase *(RIE1) 0.03 Orthogroups_2024-Update
Glyma.11G026000 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.03 Orthogroups_2024-Update
Glyma.15G012900 No alias RING/U-box superfamily protein 0.06 Orthogroups_2024-Update
Glyma.17G203800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G124800 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.03 Orthogroups_2024-Update
Mp2g06960.1 No alias RING-H2-class E3 ligase 0.02 Orthogroups_2024-Update
PSME_00052520-RA No alias (at2g05990 : 138.0) Encodes enoyl-ACP reductase a... 0.02 Orthogroups_2024-Update
Seita.2G176000.1 No alias E3 ubiquitin ligase *(DRR1) 0.04 Orthogroups_2024-Update
Sobic.004G323700.3 No alias E3 ubiquitin ligase *(DRR1) 0.04 Orthogroups_2024-Update
Sopen12g002900 No alias Ring finger domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005787 signal peptidase complex IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 333 374
No external refs found!