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  5. Seita.3G139500.1

Seita.3G139500.1


Description : plastidial RNA basal splicing factor *(WTF1)


Gene families : OG_42_0004417 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004417_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G139500.1
Cluster HCAA Clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Bradi2g15890 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.05 Orthogroups_2024-Update
Brara.I00071.1 No alias plastidial RNA basal splicing factor *(WTF1) 0.03 Orthogroups_2024-Update
GRMZM2G403797 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.03 Orthogroups_2024-Update
Glyma.03G002600 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G090100.1 No alias plastidial RNA basal splicing factor *(WTF1) 0.04 Orthogroups_2024-Update
LOC_Os05g49610 No alias ubiquitin carboxyl-terminal hydrolase, family 1,... 0.03 Orthogroups_2024-Update
MA_423098g0010 No alias (at4g01037 : 451.0) what's this factor? (WTF1); CONTAINS... 0.02 Orthogroups_2024-Update
Mp3g04080.1 No alias WTF1 plastidial RNA basal splicing factor 0.03 Orthogroups_2024-Update
Sobic.009G238100.2 No alias plastidial RNA basal splicing factor *(WTF1) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
BP GO:0015939 pantothenate metabolic process IEP Predicted GO
BP GO:0015940 pantothenate biosynthetic process IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR021099 PORR_domain 64 391
No external refs found!