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  5. Seita.3G171900.1

Seita.3G171900.1


Description : Unknown function


Gene families : OG_42_0012456 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012456_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G171900.1
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Bradi5g02740 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G082120.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G134400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.009G205000.1 No alias Unknown function 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 272 304
IPR032867 DYW_dom 707 799
IPR002885 Pentatricopeptide_repeat 21 43
IPR002885 Pentatricopeptide_repeat 81 109
IPR002885 Pentatricopeptide_repeat 438 465
IPR002885 Pentatricopeptide_repeat 111 140
IPR002885 Pentatricopeptide_repeat 502 524
IPR002885 Pentatricopeptide_repeat 247 269
IPR002885 Pentatricopeptide_repeat 307 335
IPR002885 Pentatricopeptide_repeat 377 402
IPR002885 Pentatricopeptide_repeat 407 433
IPR002885 Pentatricopeptide_repeat 49 77
IPR002885 Pentatricopeptide_repeat 213 236
No external refs found!