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  5. Seita.3G227100.1

Seita.3G227100.1


Description : RNA editing factor *(MEF21)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G227100.1
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
180944 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
AC203841.3_FG002 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
At2g03880 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.01 Orthogroups_2024-Update
Brara.A02193.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.F03480.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G085089 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G129783 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G170896 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G080400 No alias mitochondrial editing factor 21 0.02 Orthogroups_2024-Update
Glyma.12G005600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G161800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G090780.5 No alias RNA editing factor *(ECB2/VAC1) 0.02 Orthogroups_2024-Update
HORVU2Hr1G023100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G093530.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Potri.001G100600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G060600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G105700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.010G161800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.015G018700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.016G077700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G137200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Pp1s68_207V6 No alias ppr gene for putative pentatricopeptide repeat-like protein PPR 0.04 Orthogroups_2024-Update
Seita.4G225800.1 No alias Unknown function 0.09 Orthogroups_2024-Update
Sobic.001G016100.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.001G058400.1 No alias RNA editing factor *(OTP85) 0.03 Orthogroups_2024-Update
Sobic.002G007000.2 No alias RNA editing factor *(ELI1) 0.01 Orthogroups_2024-Update
Sobic.003G223000.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.009G250700.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.010G153600.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Solyc03g006990 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc03g114660 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006457 protein folding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 287 315
IPR002885 Pentatricopeptide_repeat 157 182
IPR002885 Pentatricopeptide_repeat 353 380
IPR002885 Pentatricopeptide_repeat 79 99
IPR002885 Pentatricopeptide_repeat 185 213
IPR002885 Pentatricopeptide_repeat 317 344
IPR002885 Pentatricopeptide_repeat 216 246
No external refs found!