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  5. Seita.4G001100.1

Seita.4G001100.1


Description : RING-H2-class BTL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G001100.1
Cluster HCAA Clusters: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
At3g56580 No alias E3 ubiquitin-protein ligase RZF1... 0.03 Orthogroups_2024-Update
Brara.C00329.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.C02255.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.C03763.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.D00897.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G01814.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I04047.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G021480 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G168690 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Glyma.02G276700 No alias RING-H2 finger C1A 0.03 Orthogroups_2024-Update
Glyma.14G105900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G092570.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os12g02620 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
Mp7g15970.1 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.06 Orthogroups_2024-Update
PSME_00026521-RA No alias (at3g19950 : 152.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00054449-RA No alias (at2g40830 : 144.0) Encodes a putative RING-H2 finger... 0.02 Orthogroups_2024-Update
PSME_00056956-RA No alias (at2g40830 : 186.0) Encodes a putative RING-H2 finger... 0.03 Orthogroups_2024-Update
Potri.016G029300 No alias RING-H2 finger C1A 0.03 Orthogroups_2024-Update
Pp1s7_381V6 No alias abi3-interacting protein 2-1 protein 0.02 Orthogroups_2024-Update
Seita.1G304500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G401300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G351000.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.7G303700.1 No alias gibberellin modification enzyme *(ELA) & EC_1.14... 0.03 Orthogroups_2024-Update
Sobic.004G332500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc08g075910 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G56580.3) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 185 227
IPR039525 RNF126-like_zinc-ribbon 8 43
No external refs found!