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  5. Seita.4G027600.1

Seita.4G027600.1


Description : RNA editing factor *(COD1)


Gene families : OG_42_0008601 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008601_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G027600.1
Cluster HCAA Clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
MA_10428421g0010 No alias (at4g02750 : 749.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Sobic.008G163400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc04g039940 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Sopen04g010110 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
MF GO:0008915 lipid-A-disaccharide synthase activity IEP Predicted GO
BP GO:0009245 lipid A biosynthetic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046493 lipid A metabolic process IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:1901269 lipooligosaccharide metabolic process IEP Predicted GO
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 235 259
IPR002885 Pentatricopeptide_repeat 39 67
IPR002885 Pentatricopeptide_repeat 335 360
IPR002885 Pentatricopeptide_repeat 7 33
IPR002885 Pentatricopeptide_repeat 260 308
IPR002885 Pentatricopeptide_repeat 159 207
IPR002885 Pentatricopeptide_repeat 97 129
No external refs found!