Seita.4G043000.1

Description : component *(eL33) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001366 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001366_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.4G043000.1
Cluster	HCAA Clusters: Cluster_265

Target	Alias	Description	ECC score	Gene Family Method
At1g07070	No alias	60S ribosomal protein L35a-1...	0.09	Orthogroups_2024-Update
At1g41880	No alias	60S ribosomal protein L35a-2...	0.03	Orthogroups_2024-Update
Bradi1g46840	No alias	Ribosomal protein L35Ae family protein	0.09	Orthogroups_2024-Update
Bradi3g60180	No alias	Ribosomal protein L35Ae family protein	0.03	Orthogroups_2024-Update
Bradi4g16690	No alias	Ribosomal protein L35Ae family protein	0.06	Orthogroups_2024-Update
Brara.B02119.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.18	Orthogroups_2024-Update
Brara.D00376.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.16	Orthogroups_2024-Update
Brara.G02281.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Brara.G03191.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.16	Orthogroups_2024-Update
Brara.I03824.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Cre10.g459250	No alias	Ribosomal protein L35Ae family protein	0.12	Orthogroups_2024-Update
GRMZM2G181336	No alias	Ribosomal protein L35Ae family protein	0.05	Orthogroups_2024-Update
GRMZM5G890561	No alias	Ribosomal protein L35Ae family protein	0.12	Orthogroups_2024-Update
Glyma.05G132500	No alias	Ribosomal protein L35Ae family protein	0.09	Orthogroups_2024-Update
Glyma.08G087000	No alias	Ribosomal protein L35Ae family protein	0.18	Orthogroups_2024-Update
Glyma.14G062900	No alias	Ribosomal protein L35Ae family protein	0.09	Orthogroups_2024-Update
HORVU6Hr1G083120.2	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
HORVU7Hr1G031850.4	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Kfl00148_0220	kfl00148_0220_v1.1	(at3g55750 : 81.6) Ribosomal protein L35Ae family...	0.12	Orthogroups_2024-Update
MA_79041g0010	No alias	(at1g74270 : 149.0) Ribosomal protein L35Ae family...	0.05	Orthogroups_2024-Update
Mp1g11470.1	No alias	component RPL35a of LSU proteome component	0.08	Orthogroups_2024-Update
PSME_00007301-RA	No alias	(at1g74270 : 157.0) Ribosomal protein L35Ae family...	0.07	Orthogroups_2024-Update
Potri.008G059400	No alias	Ribosomal protein L35Ae family protein	0.03	Orthogroups_2024-Update
Potri.010G194200	No alias	Ribosomal protein L35Ae family protein	0.04	Orthogroups_2024-Update
Potri.010G199400	No alias	Ribosomal protein L35Ae family protein	0.04	Orthogroups_2024-Update
Pp1s102_133V6	No alias	60s ribosomal protein	0.04	Orthogroups_2024-Update
Pp1s1_549V6	No alias	60s ribosomal protein	0.14	Orthogroups_2024-Update
Pp1s2_655V6	No alias	60s ribosomal protein	0.14	Orthogroups_2024-Update
Pp1s45_64V6	No alias	60s ribosomal protein	0.03	Orthogroups_2024-Update
Pp1s52_116V6	No alias	60s ribosomal protein	0.2	Orthogroups_2024-Update
Pp1s61_123V6	No alias	60s ribosomal protein	0.1	Orthogroups_2024-Update
Seita.1G344200.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Sobic.002G179300.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.12	Orthogroups_2024-Update
Sobic.004G322200.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Sobic.010G070500.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
Solyc03g096360	No alias	60S ribosomal protein L35a (AHRD V3.3 *** B6VC50_VERFO)	0.16	Orthogroups_2024-Update
Solyc05g052810	No alias	60S ribosomal protein L35a (AHRD V3.3 *** B6VC50_VERFO)	0.16	Orthogroups_2024-Update
Sopen03g026480	No alias	Ribosomal protein L35Ae	0.19	Orthogroups_2024-Update
Sopen05g031310	No alias	Ribosomal protein L35Ae	0.04	Orthogroups_2024-Update
Sopen05g031320	No alias	Ribosomal protein L35Ae	0.04	Orthogroups_2024-Update
evm.model.contig_2130.2	No alias	(at1g74270 : 120.0) Ribosomal protein L35Ae family...	0.21	Orthogroups_2024-Update
evm.model.tig00020723.23	No alias	(at3g55750 : 148.0) Ribosomal protein L35Ae family...	0.12	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000178	exosome (RNase complex)	IEP	Predicted GO
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006417	regulation of translation	IEP	Predicted GO
BP	GO:0006448	regulation of translational elongation	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
BP	GO:0017182	peptidyl-diphthamide metabolic process	IEP	Predicted GO
BP	GO:0017183	peptidyl-diphthamide biosynthetic process from peptidyl-histidine	IEP	Predicted GO
BP	GO:0018202	peptidyl-histidine modification	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
MF	GO:0090560	2-(3-amino-3-carboxypropyl)histidine synthase activity	IEP	Predicted GO
BP	GO:1900247	regulation of cytoplasmic translational elongation	IEP	Predicted GO
CC	GO:1905354	exoribonuclease complex	IEP	Predicted GO
BP	GO:2000765	regulation of cytoplasmic translation	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001780	Ribosomal_L35A	12	106

External Links

No external refs found!

Seita.4G043000.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation