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  5. Seita.4G194800.1

Seita.4G194800.1


Description : nuclear-encoded organellar RNA polymerase *(NEP)


Gene families : OG_42_0001092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G194800.1
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
At1g68990 No alias DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3] 0.03 Orthogroups_2024-Update
Bradi1g31066 No alias DNA/RNA polymerases superfamily protein 0.12 Orthogroups_2024-Update
Brara.B00618.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.03 Orthogroups_2024-Update
Brara.I04503.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.03 Orthogroups_2024-Update
GRMZM2G115564 No alias DNA/RNA polymerases superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G217400 No alias DNA/RNA polymerases superfamily protein 0.04 Orthogroups_2024-Update
Glyma.17G071600 No alias DNA/RNA polymerases superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os06g44230 No alias DNA-directed RNA polymerase 3A, chloroplast precursor,... 0.03 Orthogroups_2024-Update
Sobic.010G211500.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.07 Orthogroups_2024-Update
evm.model.contig_511.3 No alias (at2g24120 : 493.0) SCABRA 3 (SCA3); FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
evm.model.tig00021493.48 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
InterPro domains Description Start Stop
IPR029262 RPOL_N 137 452
No external refs found!