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  5. Seita.5G025900.1

Seita.5G025900.1


Description : serine hydroxymethyltransferase *(SHM) & EC_2.1 transferase transferring one-carbon group


Gene families : OG_42_0000626 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000626_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G025900.1
Cluster HCAA Clusters: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
A4A49_22571 No alias serine hydroxymethyltransferase 3, chloroplastic 0.03 Orthogroups_2024-Update
A4A49_25960 No alias serine hydroxymethyltransferase, mitochondrial 0.02 Orthogroups_2024-Update
Brara.D00684.1 No alias serine hydroxymethyltransferase *(SHM) & EC_2.1... 0.04 Orthogroups_2024-Update
Cre16.g664550 No alias serine transhydroxymethyltransferase 1 0.02 Orthogroups_2024-Update
LOC_Os01g65410 No alias serine hydroxymethyltransferase, mitochondrial... 0.03 Orthogroups_2024-Update
Solyc12g098490 No alias Serine hydroxymethyltransferase (AHRD V3.3 *** M1A0B7_SOLTU) 0.02 Orthogroups_2024-Update
Sopen02g036190 No alias Serine hydroxymethyltransferase 0.04 Orthogroups_2024-Update
evm.model.tig00020903.25 No alias (at4g13930 : 343.0) Encodes a serine... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009092 homoserine metabolic process IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
BP GO:0019346 transsulfuration IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
BP GO:0050667 homocysteine metabolic process IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 66 463
No external refs found!