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  5. Seita.5G180800.1

Seita.5G180800.1


Description : Unknown function


Gene families : OG_42_0010897 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010897_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G180800.1
Cluster HCAA Clusters: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
At5g66500 No alias Pentatricopeptide repeat-containing protein At5g66500,... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 271 298
IPR002885 Pentatricopeptide_repeat 46 71
IPR002885 Pentatricopeptide_repeat 177 197
IPR002885 Pentatricopeptide_repeat 241 269
IPR002885 Pentatricopeptide_repeat 308 336
IPR002885 Pentatricopeptide_repeat 146 165
IPR002885 Pentatricopeptide_repeat 346 369
IPR002885 Pentatricopeptide_repeat 72 118
No external refs found!