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  5. Seita.5G253700.1

Seita.5G253700.1


Description : component *(bL12c) of large plastid ribosomal-subunit proteome


Gene families : OG_42_0003941 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003941_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G253700.1
Cluster HCAA Clusters: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
A4A49_11444 No alias 50s ribosomal protein l12, chloroplastic 0.06 Orthogroups_2024-Update
Bradi2g45730 No alias ribosomal protein L12-C 0.08 Orthogroups_2024-Update
Brara.B03314.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Brara.F03180.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Brara.F03181.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Brara.I00300.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Cre13.g581650 No alias ribosomal protein L12-A 0.12 Orthogroups_2024-Update
GRMZM2G360021 No alias ribosomal protein L12-C 0.04 Orthogroups_2024-Update
Glyma.11G099300 No alias ribosomal protein L12-A 0.03 Orthogroups_2024-Update
HORVU1Hr1G089760.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.13 Orthogroups_2024-Update
HORVU3Hr1G059810.2 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.1 Orthogroups_2024-Update
Kfl00181_0250 kfl00181_0250_v1.1 (q9tl30|rk12_nepol : 115.0) Chloroplast 50S ribosomal... 0.07 Orthogroups_2024-Update
LOC_Os05g49320 No alias ribosomal protein L7/L12 C-terminal domain containing... 0.03 Orthogroups_2024-Update
Mp5g15720.1 No alias component psRPL12 of large ribosomal subunit proteome 0.04 Orthogroups_2024-Update
Potri.001G346100 No alias ribosomal protein L12-A 0.09 Orthogroups_2024-Update
Pp1s215_82V6 No alias ribosomal protein l12 0.09 Orthogroups_2024-Update
Pp1s242_95V6 No alias ribosomal protein l12 0.1 Orthogroups_2024-Update
Pp1s60_169V6 No alias ribosomal protein l12 0.04 Orthogroups_2024-Update
Pp1s6_183V6 No alias ribosomal protein l12 0.08 Orthogroups_2024-Update
Sobic.003G246400.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.15 Orthogroups_2024-Update
Sopen02g031490 No alias Ribosomal protein L7/L12 C-terminal domain 0.05 Orthogroups_2024-Update
Sopen02g031500 No alias Ribosomal protein L7/L12 C-terminal domain 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
CC GO:0005886 plasma membrane IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR008932 Ribosomal_L7/L12_oligo 54 100
IPR013823 Ribosomal_L7/L12_C 114 180
No external refs found!