Coexpression cluster: Cluster_3 (HCAA Clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005840 ribosome 14.48% (21/145) 4.14 0.0 0.0
GO:1990904 ribonucleoprotein complex 15.17% (22/145) 4.0 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 14.48% (21/145) 3.97 0.0 0.0
GO:0043228 non-membrane-bounded organelle 14.48% (21/145) 3.97 0.0 0.0
GO:0003735 structural constituent of ribosome 13.79% (20/145) 4.02 0.0 0.0
GO:0043043 peptide biosynthetic process 13.79% (20/145) 4.01 0.0 0.0
GO:0043604 amide biosynthetic process 13.79% (20/145) 3.95 0.0 0.0
GO:0005198 structural molecule activity 13.79% (20/145) 3.92 0.0 0.0
GO:0006518 peptide metabolic process 13.79% (20/145) 3.93 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 15.86% (23/145) 3.46 0.0 0.0
GO:0043603 cellular amide metabolic process 13.79% (20/145) 3.84 0.0 0.0
GO:0006412 translation 13.1% (19/145) 3.97 0.0 0.0
GO:0032991 protein-containing complex 18.62% (27/145) 2.98 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 15.86% (23/145) 3.18 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 14.48% (21/145) 3.38 0.0 0.0
GO:0044444 cytoplasmic part 15.17% (22/145) 3.26 0.0 0.0
GO:0044464 cell part 20.69% (30/145) 2.55 0.0 0.0
GO:0009059 macromolecule biosynthetic process 14.48% (21/145) 3.24 0.0 0.0
GO:0044424 intracellular part 20.0% (29/145) 2.56 0.0 0.0
GO:0043229 intracellular organelle 14.48% (21/145) 3.14 0.0 0.0
GO:0043226 organelle 14.48% (21/145) 3.14 0.0 0.0
GO:0044249 cellular biosynthetic process 16.55% (24/145) 2.71 0.0 0.0
GO:1901576 organic substance biosynthetic process 16.55% (24/145) 2.64 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 17.93% (26/145) 2.42 0.0 0.0
GO:0009058 biosynthetic process 16.55% (24/145) 2.47 0.0 0.0
GO:0005575 cellular_component 22.07% (32/145) 1.51 0.0 1e-06
GO:0009987 cellular process 27.59% (40/145) 1.25 0.0 1e-06
GO:0044237 cellular metabolic process 24.83% (36/145) 1.29 0.0 3e-06
GO:0019898 extrinsic component of membrane 2.76% (4/145) 5.73 1e-06 9e-06
GO:0009654 photosystem II oxygen evolving complex 2.76% (4/145) 5.44 2e-06 2.1e-05
GO:0008152 metabolic process 27.59% (40/145) 1.06 3e-06 3.3e-05
GO:1990204 oxidoreductase complex 2.76% (4/145) 5.14 5e-06 4.7e-05
GO:1901564 organonitrogen compound metabolic process 20.0% (29/145) 1.3 5e-06 4.8e-05
GO:0003723 RNA binding 8.28% (12/145) 2.34 5e-06 4.8e-05
GO:0009521 photosystem 3.45% (5/145) 4.24 7e-06 6.2e-05
GO:0015979 photosynthesis 3.45% (5/145) 4.18 9e-06 7.6e-05
GO:0044436 thylakoid part 3.45% (5/145) 4.05 1.3e-05 0.000114
GO:0016853 isomerase activity 4.14% (6/145) 3.35 2.9e-05 0.000238
GO:0009523 photosystem II 2.76% (4/145) 4.44 3.5e-05 0.000283
GO:0071705 nitrogen compound transport 4.14% (6/145) 3.16 6.1e-05 0.000478
GO:0006807 nitrogen compound metabolic process 20.69% (30/145) 1.08 6.6e-05 0.000501
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 2.76% (4/145) 4.09 9.2e-05 0.000669
GO:0016859 cis-trans isomerase activity 2.76% (4/145) 4.09 9.2e-05 0.000669
GO:0071702 organic substance transport 4.14% (6/145) 3.03 0.0001 0.000712
GO:0071704 organic substance metabolic process 23.45% (34/145) 0.93 0.000142 0.000989
GO:0015833 peptide transport 3.45% (5/145) 3.29 0.000169 0.001102
GO:0042886 amide transport 3.45% (5/145) 3.29 0.000169 0.001102
GO:0015031 protein transport 3.45% (5/145) 3.29 0.000169 0.001102
GO:0033036 macromolecule localization 3.45% (5/145) 3.23 0.000204 0.001251
GO:0008104 protein localization 3.45% (5/145) 3.23 0.000204 0.001251
GO:0045184 establishment of protein localization 3.45% (5/145) 3.24 0.000196 0.001255
GO:0019843 rRNA binding 2.07% (3/145) 4.62 0.000244 0.001466
GO:0044267 cellular protein metabolic process 13.79% (20/145) 1.26 0.000254 0.001498
GO:0043170 macromolecule metabolic process 18.62% (27/145) 1.02 0.000286 0.001661
GO:0006457 protein folding 2.07% (3/145) 4.31 0.000466 0.00265
GO:0019538 protein metabolic process 15.17% (22/145) 1.11 0.000539 0.00296
GO:0008150 biological_process 33.79% (49/145) 0.64 0.000532 0.002972
GO:0044238 primary metabolic process 21.38% (31/145) 0.85 0.000743 0.004009
GO:0044260 cellular macromolecule metabolic process 15.17% (22/145) 1.07 0.000769 0.004078
GO:0016874 ligase activity 2.76% (4/145) 3.23 0.000916 0.00478
GO:0098796 membrane protein complex 3.45% (5/145) 2.71 0.001051 0.00539
GO:0006613 cotranslational protein targeting to membrane 1.38% (2/145) 5.09 0.001537 0.006972
GO:0070972 protein localization to endoplasmic reticulum 1.38% (2/145) 5.09 0.001537 0.006972
GO:0072599 establishment of protein localization to endoplasmic reticulum 1.38% (2/145) 5.09 0.001537 0.006972
GO:0006612 protein targeting to membrane 1.38% (2/145) 5.09 0.001537 0.006972
GO:0045047 protein targeting to ER 1.38% (2/145) 5.09 0.001537 0.006972
GO:0006614 SRP-dependent cotranslational protein targeting to membrane 1.38% (2/145) 5.09 0.001537 0.006972
GO:0044425 membrane part 3.45% (5/145) 2.61 0.001458 0.007245
GO:0008135 translation factor activity, RNA binding 2.07% (3/145) 3.75 0.00145 0.007322
GO:1902494 catalytic complex 2.76% (4/145) 2.96 0.001829 0.008179
GO:0006418 tRNA aminoacylation for protein translation 2.07% (3/145) 3.58 0.002074 0.009143
GO:0006605 protein targeting 1.38% (2/145) 4.81 0.002278 0.009904
GO:0043039 tRNA aminoacylation 2.07% (3/145) 3.51 0.002385 0.010087
GO:0043038 amino acid activation 2.07% (3/145) 3.51 0.002385 0.010087
GO:0090150 establishment of protein localization to membrane 1.38% (2/145) 4.73 0.002556 0.010256
GO:0072657 protein localization to membrane 1.38% (2/145) 4.73 0.002556 0.010256
GO:0004812 aminoacyl-tRNA ligase activity 2.07% (3/145) 3.48 0.002494 0.010273
GO:0016875 ligase activity, forming carbon-oxygen bonds 2.07% (3/145) 3.48 0.002494 0.010273
GO:0006520 cellular amino acid metabolic process 2.76% (4/145) 2.76 0.003 0.011886
GO:0033365 protein localization to organelle 1.38% (2/145) 4.51 0.003479 0.013445
GO:0072594 establishment of protein localization to organelle 1.38% (2/145) 4.51 0.003479 0.013445
GO:0006423 cysteinyl-tRNA aminoacylation 0.69% (1/145) 7.9 0.004193 0.015623
GO:0004366 glycerol-3-phosphate O-acyltransferase activity 0.69% (1/145) 7.9 0.004193 0.015623
GO:0004817 cysteine-tRNA ligase activity 0.69% (1/145) 7.9 0.004193 0.015623
GO:0070727 cellular macromolecule localization 1.38% (2/145) 4.2 0.005311 0.019331
GO:0034613 cellular protein localization 1.38% (2/145) 4.2 0.005311 0.019331
GO:0140101 catalytic activity, acting on a tRNA 2.07% (3/145) 3.06 0.005731 0.020617
GO:0006399 tRNA metabolic process 2.07% (3/145) 3.01 0.006301 0.022413
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 1.38% (2/145) 3.99 0.007032 0.02473
GO:0003676 nucleic acid binding 10.34% (15/145) 1.01 0.008013 0.027867
GO:0004109 coproporphyrinogen oxidase activity 0.69% (1/145) 6.9 0.008368 0.028469
GO:0004019 adenylosuccinate synthase activity 0.69% (1/145) 6.9 0.008368 0.028469
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 0.69% (1/145) 6.31 0.012526 0.041269
GO:0003333 amino acid transmembrane transport 0.69% (1/145) 6.31 0.012526 0.041269
GO:0006865 amino acid transport 0.69% (1/145) 6.31 0.012526 0.041269
GO:0005509 calcium ion binding 2.76% (4/145) 2.1 0.014673 0.047841
GO:0006553 lysine metabolic process 0.69% (1/145) 5.9 0.016666 0.049213
GO:0009052 pentose-phosphate shunt, non-oxidative branch 0.69% (1/145) 5.9 0.016666 0.049213
GO:0009085 lysine biosynthetic process 0.69% (1/145) 5.9 0.016666 0.049213
GO:0009536 plastid 0.69% (1/145) 5.9 0.016666 0.049213
GO:0046451 diaminopimelate metabolic process 0.69% (1/145) 5.9 0.016666 0.049213
GO:0009089 lysine biosynthetic process via diaminopimelate 0.69% (1/145) 5.9 0.016666 0.049213
GO:0005886 plasma membrane 0.69% (1/145) 5.9 0.016666 0.049213
GO:0004751 ribose-5-phosphate isomerase activity 0.69% (1/145) 5.9 0.016666 0.049213
GO:0009507 chloroplast 0.69% (1/145) 5.9 0.016666 0.049213
GO:0003674 molecular_function 47.59% (69/145) 0.31 0.015344 0.049513
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_1 0.062 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_36 0.033 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_43 0.058 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_66 0.02 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_76 0.08 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_84 0.034 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_248 0.022 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_37 0.121 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_46 0.033 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_57 0.057 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_71 0.025 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_110 0.032 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_118 0.02 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_243 0.035 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_34 0.035 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_115 0.026 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_173 0.031 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_3 0.024 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_12 0.058 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_31 0.067 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_74 0.02 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_105 0.026 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_106 0.021 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_147 0.046 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_20 0.09 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_43 0.046 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_52 0.025 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_69 0.035 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_98 0.025 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_3 0.049 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_23 0.021 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_55 0.022 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_80 0.034 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_187 0.021 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_226 0.026 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_15 0.068 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_37 0.13 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_137 0.028 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_174 0.026 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_189 0.024 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_57 0.02 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_73 0.026 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_67 0.024 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_210 0.026 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_7 0.03 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_206 0.033 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_41 0.123 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_53 0.049 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_71 0.027 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_77 0.021 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_121 0.054 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_132 0.034 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_160 0.052 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_203 0.021 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_206 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_124 0.03 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_212 0.032 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_254 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_271 0.026 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_302 0.033 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_320 0.021 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_338 0.027 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_384 0.03 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_426 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_464 0.024 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_501 0.021 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_53 0.075 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_67 0.021 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_78 0.029 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_86 0.02 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_88 0.024 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_23 0.054 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_79 0.02 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_117 0.021 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_56 0.077 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_107 0.044 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_190 0.025 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_198 0.026 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0086 0.031 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0094 0.022 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0112 0.05 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0119 0.021 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0139 0.027 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0030 0.133 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0036 0.034 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0050 0.076 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0138 0.02 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_20 0.021 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_23 0.112 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_30 0.021 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_57 0.037 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_118 0.024 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_158 0.026 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_286 0.032 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_26 0.022 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_38 0.026 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_45 0.074 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_59 0.031 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_101 0.04 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_151 0.02 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_158 0.097 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_6 0.11 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_56 0.037 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_63 0.052 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_146 0.121 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_148 0.025 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_152 0.025 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_211 0.024 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_222 0.06 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_223 0.02 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_34 0.021 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_5 0.027 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_9 0.038 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_15 0.025 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_19 0.035 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_23 0.03 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_52 0.038 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_63 0.037 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_106 0.048 Orthogroups_2024-Update Compare
Sequences (145) (download table)

InterPro Domains

GO Terms

Family Terms