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  5. Seita.5G348300.1

Seita.5G348300.1


Description : protein involved in PS-I assembly *(Y3IP1)


Gene families : OG_42_0007085 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007085_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G348300.1
Cluster HCAA Clusters: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Bradi2g52400 No alias Function unknown 0.06 Orthogroups_2024-Update
Cre06.g280650 No alias Function unknown 0.03 Orthogroups_2024-Update
HORVU3Hr1G078200.1 No alias protein involved in PS-I assembly *(Y3IP1) 0.03 Orthogroups_2024-Update
Kfl00150_0100 kfl00150_0100_v1.1 (at5g44650 : 110.0) Encodes a chloroplast protein that... 0.03 Orthogroups_2024-Update
Potri.001G074200 No alias Function unknown 0.06 Orthogroups_2024-Update
Pp1s189_19V6 No alias No description available 0.02 Orthogroups_2024-Update
Sobic.003G324700.1 No alias protein involved in PS-I assembly *(Y3IP1) 0.08 Orthogroups_2024-Update
Solyc10g005180 No alias Ycf3-interacting protein 1, chloroplastic (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004109 coproporphyrinogen oxidase activity IEP Predicted GO
MF GO:0004133 glycogen debranching enzyme activity IEP Predicted GO
MF GO:0004134 4-alpha-glucanotransferase activity IEP Predicted GO
MF GO:0004150 dihydroneopterin aldolase activity IEP Predicted GO
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP Predicted GO
MF GO:0004418 hydroxymethylbilane synthase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006760 folic acid-containing compound metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0035596 methylthiotransferase activity IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0050497 transferase activity, transferring alkylthio groups IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!