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  5. Seita.5G376500.1

Seita.5G376500.1


Description : component *(eL36) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001685 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001685_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G376500.1
Cluster HCAA Clusters: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
439710 No alias Ribosomal protein L36e family protein 0.02 Orthogroups_2024-Update
At2g37600 No alias 60S ribosomal protein L36-1... 0.1 Orthogroups_2024-Update
Bradi2g23260 No alias Ribosomal protein L36e family protein 0.05 Orthogroups_2024-Update
Brara.I03660.1 No alias component *(eL36) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
HORVU1Hr1G072270.1 No alias component *(eL36) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
LOC_Os01g62350 No alias 60S ribosomal protein L36-2, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00049847-RA No alias (at3g53740 : 141.0) Ribosomal protein L36e family... 0.05 Orthogroups_2024-Update
Potri.004G057000 No alias Ribosomal protein L36e family protein 0.03 Orthogroups_2024-Update
Potri.012G142600 No alias Ribosomal protein L36e family protein 0.03 Orthogroups_2024-Update
Pp1s249_65V6 No alias 60s ribosomal protein l36-2 0.03 Orthogroups_2024-Update
Pp1s84_102V6 No alias 60s ribosomal protein l36-2 0.03 Orthogroups_2024-Update
Sobic.009G163800.1 No alias component *(eL36) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Solyc06g036050 No alias 60S ribosomal protein L36 (AHRD V3.3 *** K4C4X4_SOLLC) 0.04 Orthogroups_2024-Update
Sopen06g011800 No alias Ribosomal protein L36e 0.02 Orthogroups_2024-Update
evm.model.tig00021493.69 No alias (at2g37600 : 127.0) Ribosomal protein L36e family... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000509 Ribosomal_L36e 8 101
No external refs found!